| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,481,911 – 20,482,009 |
| Length | 98 |
| Max. P | 0.727469 |
| Location | 20,481,911 – 20,482,009 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 72.28 |
| Shannon entropy | 0.53232 |
| G+C content | 0.36771 |
| Mean single sequence MFE | -19.47 |
| Consensus MFE | -9.67 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20481911 98 + 23011544 -----AAUCUUUAAGCUAGCGAG--UCUUAAACUCGUAAAUUCCUCGAAAU-GUUUGUCACGUUCCGCACAUAAAAGGAUUU-CAAUUUUCCAAUGUGACGAAAAGG--------- -----...((((......(((((--(.....))))))..............-..((((((((((............(((...-......))))))))))))))))).--------- ( -18.50, z-score = -1.07, R) >droEre2.scaffold_4845 18629205 98 - 22589142 -----AAUCCUGAAGCUCACGAG--UCUUAAAGUCGUAAAUUCCUUGAAAUCGCUUGUCACGUUUCGCACAUAAAGG-AUUU-CAAUUUUCCAAUGUGACAAAAAGG--------- -----...((((((((..(((((--(.......(((.........)))....))))))...)))))((((((...((-(...-......))).))))).)....)))--------- ( -16.20, z-score = -0.15, R) >droYak2.chr2R 6837273 99 + 21139217 -----AAUCUUUAAGCUUGCAAG--UCUUAAACUCGUAAAUUUCUUGAAAUCGCUUGUCACGUUUCGCACAUAAAAGGAUUU-CAAUUUUCCAAUGUGACAAAAAGG--------- -----....((((((.((((.((--(.....))).))))....)))))).....((((((((((............(((...-......))))))))))))).....--------- ( -15.60, z-score = -0.68, R) >droSec1.super_18 360140 98 + 1342155 -----AAUCUUUAAGCUAGCGAG--UCUUAAACUCGUAAAUUUCUUGAAAU-GUUUGUCACGUUCCGCACAUAAAAGGAUUU-CAAUUUUCCAAUGUGACGAAAAGG--------- -----....((((((...(((((--(.....))))))......))))))..-.(((((((((((............(((...-......))))))))))))))....--------- ( -19.70, z-score = -1.41, R) >droSim1.chr2L 20045340 98 + 22036055 -----AAUCUUUAAGCUAGCAAG--UCAUAAACUCGUAAAUUUCUUGAAAU-GUUUGUCACGUUCCGCACAUAAAAGGAUUU-CAAUUUUCCAAUGUGACGAAAAGG--------- -----....((((((...((.((--(.....))).))......))))))..-.(((((((((((............(((...-......))))))))))))))....--------- ( -13.80, z-score = 0.17, R) >droPer1.super_1 985109 96 - 10282868 -----AAUCUUAAAGCUGAAAGCCCUCUUAGCAUCGUAAAU-CCCCGAAAUCGUU-GUCACGUUUCGCACAUAAAAG-AUUU-CA--UUUCCAAUGUGACAAAAAGG--------- -----.........(((((........))))).(((.....-...))).....((-((((((((.............-....-..--.....)))))))))).....--------- ( -14.16, z-score = -0.88, R) >dp4.chr4_group3 3840913 101 - 11692001 -----AAUCUUAAAGCUGAAAGCCUUCUUAGCAUCGUAAAUUCCCCGAAAUCGUUUGUCACGUUUCGCACAUAAAAGGAUUU-CAAUUUUCCAAUGUGACAAAAAGG--------- -----...(((...(((((........))))).....................(((((((((((............(((...-......))))))))))))))))).--------- ( -16.70, z-score = -0.91, R) >droAna3.scaffold_12916 6980707 106 + 16180835 AAGCUUCUCCUCUUCAUAUCCUUCGUCUUUGGAUCGUAAAUUCCUUGGAUUCGUUUGUCACGUUUCGCACAUAAAAGGAUUU-CAAUUUUCCAAUGUGACAAAAAGG--------- ...................((((.((((..(((........)))..))))...(((((((((((............(((...-......))))))))))))))))))--------- ( -20.20, z-score = -1.44, R) >droVir3.scaffold_12963 6584338 103 - 20206255 ------------UAUAUUUAUGC-AUCGUCAAGGGGCAUAAAAUCUAAAAUCGUUUGUCACGUUUUGCACAUAAAAGGAUUUUCAAUUUUCCAAUGUGACAAGCGCGCAAUGCCCG ------------...........-.........((((((............(((((((((((((............(((..........))))))))))))))))....)))))). ( -23.99, z-score = -1.79, R) >droMoj3.scaffold_6500 24540248 94 + 32352404 ------------UAGAUUUAUGCUUUC-UCAGGGGGCAUAAAAUCUAAAAUCGUUUGUCACGUUUUGCACAUAAAAGGAUUUUCAAUUUUCCAAUGUGACAAGCGCG--------- ------------((((((((((((..(-...)..))))).)))))))....(((((((((((((............(((..........))))))))))))))))..--------- ( -29.30, z-score = -5.04, R) >droGri2.scaffold_15126 6242496 104 + 8399593 ------------UAUAUGUAUGCCGUCGUCAAGGGGCAUAAAAUCUAAAGUCGUUUGUCACGUUUUGCACAUAAAAGGAUUUUCAAUUUUCCAAUGUGACAAGCGCGCAAUGCCCG ------------......((((((.((.....)))))))).........(((((((((((((((............(((..........)))))))))))))))).))........ ( -26.00, z-score = -1.60, R) >consensus _____AAUCUUUAAGCUAGCAAC__UCUUAAACUCGUAAAUUCCUUGAAAUCGUUUGUCACGUUUCGCACAUAAAAGGAUUU_CAAUUUUCCAAUGUGACAAAAAGG_________ .....................................................(((((((((((............(((..........))))))))))))))............. ( -9.67 = -9.80 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:24 2011