| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,453,139 – 20,453,193 |
| Length | 54 |
| Max. P | 0.789379 |
| Location | 20,453,139 – 20,453,193 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 68.69 |
| Shannon entropy | 0.54021 |
| G+C content | 0.41723 |
| Mean single sequence MFE | -15.08 |
| Consensus MFE | -5.24 |
| Energy contribution | -6.43 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.789379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20453139 54 - 23011544 -----UGAAGUUUAAUGGGAA--UCAGUAGUU----GUGGCUAUCCUGGUUUUCUGCUGAGCAUG -----....(((((..(..((--((((((((.----...))))..))))))..)...)))))... ( -14.10, z-score = -1.58, R) >droSim1.chr2L 20014810 54 - 22036055 -----UGAAGUUCAAUGGGAA--CCAGUAGUU----GUGGCUAUCCUGGUUUUCUGCUGAGCAUG -----....(((((..(..((--((((((((.----...))))..))))))..)...)))))... ( -18.90, z-score = -2.77, R) >droSec1.super_18 331499 54 - 1342155 -----UGAAGUUCAUUGGGAA--CCAGUAGUU----GUGGCUAUCCUGGUUUUCUGCUGAGCAUG -----....(((((..(..((--((((((((.----...))))..))))))..)...)))))... ( -18.90, z-score = -2.72, R) >droYak2.chr2R 6809352 55 - 21139217 -----UAAAAUUCAAUGGGAA--UCGGUAGCU---AAUGGCGAACCAGGUUUUCUGCUGAACAUG -----.....((((..(..((--(((((.((.---....))..))).))))..)...)))).... ( -12.60, z-score = -1.58, R) >droEre2.scaffold_4845 18600524 60 + 22589142 UGAAUGGGAGUUCAAUGGGAA--UCGGUAGCU---AAUGGCUAGCCAGGUUUUCAGCUGAACAUG .........(((((.((..((--((((((((.---....))).))).))))..))..)))))... ( -20.10, z-score = -3.00, R) >droMoj3.scaffold_6500 9715385 60 + 32352404 -----UGAAGUUUGCUUUUCAUUUCAUUAUUUUUACAUUUCCAAAUGAGUUUACUCUUCACUCUU -----(((((.......(((((((..................)))))))......)))))..... ( -5.89, z-score = -1.34, R) >consensus _____UGAAGUUCAAUGGGAA__UCAGUAGUU____AUGGCUAUCCUGGUUUUCUGCUGAGCAUG .........(((((..(((((.....((((((......))))))......)))))..)))))... ( -5.24 = -6.43 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:23 2011