| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,442,346 – 20,442,436 |
| Length | 90 |
| Max. P | 0.895165 |
| Location | 20,442,346 – 20,442,436 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 61.36 |
| Shannon entropy | 0.77085 |
| G+C content | 0.59406 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -13.12 |
| Energy contribution | -12.36 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20442346 90 + 23011544 ------GUGGCCGUAGACU-ACUCCGGACUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCGGAGUUGGUGAACCAA---------- ------.............-((((((((........((((.((((((...))))))..))))(((.......)))...))))))))(((....))).---------- ( -32.40, z-score = -0.86, R) >droSim1.chr2L 20013043 95 + 22036055 ------GUGGCCGUAGACU-AUUCCGGACUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCGGAGUUGGUGAACCAACAGCA----- ------...((........-..((((((........((((.((((((...))))))..))))(((.......)))...))))))(((((....))))).)).----- ( -34.80, z-score = -1.15, R) >droSec1.super_18 329830 90 + 1342155 ------GUGGCCGUAGACU-ACUCCGGACUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCGGAGUUGGUGAACCAA---------- ------.............-((((((((........((((.((((((...))))))..))))(((.......)))...))))))))(((....))).---------- ( -32.40, z-score = -0.86, R) >droYak2.chr2R 6807683 90 + 21139217 ------GUGGCCGUUGACU-ACUCCGGAUUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCGGAGUUGGUGAUCCAA---------- ------.(((....(.(((-(((((((((.(((...((((.((((((...))))))..))))..........)))..)))))))).)))).).))).---------- ( -35.32, z-score = -1.90, R) >droEre2.scaffold_4845 18598865 90 - 22589142 ------GUGGCCGUAGACU-ACUCCGGAUUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCGGAGUUGGUGAUCCAA---------- ------((.((((......-(((((((((.(((...((((.((((((...))))))..))))..........)))..))))))))))))).))....---------- ( -34.02, z-score = -1.53, R) >droAna3.scaffold_12916 3972958 96 + 16180835 GCGACAUCGGCGACGGCAG-UUGCCACAUUGCCGCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCGGAGUUGGUGACCCAA---------- (((.(.(((((..((((((-(......)))))))..)))))((((((...))))))....)))).(((((((((.....)))).)))))........---------- ( -38.40, z-score = -1.23, R) >dp4.chr4_group4 2686850 98 + 6586962 ---GCGGCAGCGGCGGCAG-UGACAACGAUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAAUUUGGCCUAUCCAGAGUUGAUUCCCCAACAGCA----- ---((((.(((((.((((.-((....)).)))))).((((.((((((...))))))..)))))))))..(((((.....)))))((((......)))).)).----- ( -34.30, z-score = -0.66, R) >droPer1.super_10 1695254 98 + 3432795 ---GCGGCAGCGGCGGCAG-UGACAACGCUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAAUUUGGCCUAUCCAGAGUUGAUUCCCCAACAGCA----- ---((((.(((((.(((((-((....))))))))).((((.((((((...))))))..)))))))))..(((((.....)))))((((......)))).)).----- ( -40.60, z-score = -2.09, R) >droWil1.scaffold_180764 1854882 107 - 3949147 ACGGGAUUGGAUUCAACAUGAUCAUGAAUUAGAUGAACUUAACAGUUCCAAUUUACAUGAACGUCUAUCCAUGGCAUAUCCAGAGUUACUAUCAUUGGGUACACCAU ...((((.((((((.....))(((((...((((((((((....)))))..))))))))))..))))))))((((..(((((((.(.......).)))))))..)))) ( -22.90, z-score = -0.58, R) >droVir3.scaffold_12963 2606905 75 - 20206255 ---------------CCAC-AUCGCGCCUCCUCCGCGUUCAGCAGCGCCACGCUGCAGCAACGCCUCGCGCUGGCAUAUCCAGAGCUGCAA---------------- ---------------....-...((.........((((((.((((((...)))))).).)))))...((.((((.....)))).)).))..---------------- ( -25.10, z-score = -0.77, R) >droMoj3.scaffold_6500 9714001 75 - 32352404 ---------------CCAC-AUCGGGCCUCGUCUGCGUUCAGUAGCGCAACGCUGCAGCAACGCCUGGCGCUGGCCUAUCCAGAGCUGCAA---------------- ---------------....-...(((((.((((.((((((.((((((...)))))).).)))))..))))..)))))..............---------------- ( -28.30, z-score = -0.44, R) >droGri2.scaffold_15252 2170406 75 - 17193109 ---------------CCAC-AUCGUGCCUCGUCAGCGUUUAGCAGCGCAACGUUGCAACAACGCCUGGCGCUGGCCUAUCCAGAGCAACAA---------------- ---------------....-....(((..((((((((((..((((((...))))))...)))).))))))((((.....)))).)))....---------------- ( -24.60, z-score = -1.22, R) >consensus ______GUGGCCGUAGCAU_AUUCCGCAUUGCCCCAGCUGAGCAGUGCCACACUGCAGCAGCGCUUCAACCUGGCCUAUCCAGAGUUGGUGACCCAA__________ ....................................((((.((((((...))))))..))))........((((.....))))........................ (-13.12 = -12.36 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:18 2011