| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,887,219 – 1,887,317 |
| Length | 98 |
| Max. P | 0.643131 |
| Location | 1,887,219 – 1,887,317 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.79 |
| Shannon entropy | 0.38576 |
| G+C content | 0.35425 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -18.88 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1887219 98 + 23011544 UGCCAGCAAAGGAAGCUGCAAAAUGUUGGUUAGUGCAUAAUCAAAGGAGAAUUGUUUGGUAUUCUUUGAUUGUACAGAUUGGCUUUAAUUUGAUUUUU---------------------- (((.(((.......))))))....((..(((.(((((..(((((((((..(((....))).)))))))))))))).)))..))...............---------------------- ( -24.20, z-score = -1.44, R) >droEre2.scaffold_4929 1932798 120 + 26641161 UGCCGGCAAGAGAAGCUGCAAAAUGUUGGUUAGUGCAUAAUCAGAGAACAAUUGCUUGGUAUUCUUUGAUUGCACCGAUUGACUUUAAUAUACAUACAUAUGUACUAACUUUCGCUUCUG ..........((((((........((..((..(((((..((((((((((((....)))...))))))))))))))..))..)).......(((((....))))).........)))))). ( -31.80, z-score = -2.33, R) >droYak2.chr2L 1870307 120 + 22324452 UGCCAGCAAAGGAAGCUGCAAAAUCUUGGUUAGUGCAUAAUCAGAGAACUAUUGCUUGGUAUUCUUUGAUUGCACAGAUGGGCUUUAAUAUACAUAUGUUUGUAUUAACUUUCGAUUCUG (((.(((.......)))))).((((..((((((((((((((((((((((((.....))))..)))))))))).(((.(((............))).))).))))))))))...))))... ( -29.60, z-score = -1.18, R) >droSim1.chr2L_random 98743 98 + 909653 UGCCAGCAAAGGAAGCUGCAAAAUGUUGGCUAGUACAUAAUCAGGCAAGAAUUGUUUGGUAUUCUUUGAUUGCACAGAUUGGUUUUAAUUUGUUUUUU---------------------- .((...(((((((((((((.....).)))))........((((((((.....)))))))).)))))))...))((((((((....)))))))).....---------------------- ( -21.10, z-score = 0.08, R) >consensus UGCCAGCAAAGGAAGCUGCAAAAUGUUGGUUAGUGCAUAAUCAGAGAACAAUUGCUUGGUAUUCUUUGAUUGCACAGAUUGGCUUUAAUAUACAUAUU______________________ (((.(((.......))))))....((..(((.(((((..(((((((((.............)))))))))))))).)))..))..................................... (-18.88 = -18.70 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:35 2011