| Sequence ID | dm3.chr2L |
|---|---|
| Location | 178,464 – 178,571 |
| Length | 107 |
| Max. P | 0.988643 |
| Location | 178,464 – 178,571 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 87.77 |
| Shannon entropy | 0.16849 |
| G+C content | 0.35680 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -21.25 |
| Energy contribution | -22.03 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.30 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.988643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 178464 107 + 23011544 -AAAGCUUUUUCUCUUGUUUUCAUAAAAAUAAGAGUGCUUAUAUUAGUUUACUCAAUUCGUAUAUAUGUGAUGCCACUUUGCAUCGCAUGCCUAGGAUCUGACGAAGA- -.((((.....((((((((((....)))))))))).))))............(((..((.((..((((((((((......))))))))))..)).))..)))......- ( -29.60, z-score = -3.65, R) >droSec1.super_14 177408 109 + 2068291 AAACGCGAUUUCUCUAGUUUUCGUACAAAUAUGUUUACUUAUAUUAGUUUACUCGAUUCAUUUAUAUGUGGUGCUACUUUGCAUCGCAUGCCUGGGAUCUGACGAAGAC ................((((((((.((.....((..(((......)))..))..(((((.....((((((((((......))))))))))....))))))))))))))) ( -29.10, z-score = -3.18, R) >droSim1.chr2L 182031 109 + 22036055 AAACGCGUUUUCUCUAUUUUUCGUACAAAUAAGUUUACUUAUAUUAGUUUACUCGAUUCAUUCAUAUGUGGUGCUACUUUGCAUCGCAUGCCUGGGAUCUGACGAAGAC .................(((((((.((....(((..(((......)))..))).(((((.....((((((((((......))))))))))....)))))))))))))). ( -27.70, z-score = -3.08, R) >consensus AAACGCGUUUUCUCUAGUUUUCGUACAAAUAAGUUUACUUAUAUUAGUUUACUCGAUUCAUUUAUAUGUGGUGCUACUUUGCAUCGCAUGCCUGGGAUCUGACGAAGAC .................(((((((....(((((....)))))............(((((.....((((((((((......))))))))))....)))))..))))))). (-21.25 = -22.03 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:15 2011