| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,419,620 – 20,419,736 |
| Length | 116 |
| Max. P | 0.827559 |
| Location | 20,419,620 – 20,419,736 |
|---|---|
| Length | 116 |
| Sequences | 11 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 56.63 |
| Shannon entropy | 0.94547 |
| G+C content | 0.38966 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -8.27 |
| Energy contribution | -7.07 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.87 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20419620 116 + 23011544 CGUCUUCGGAGACAAAGUUUACAUGCUAAGG----AUAAGAUCUUUUUCGUGUCUACAAUGCUCCAAGAGCAAAUGUUCGUUUAAAU--CA--UCCUUGGCAUUCAAUAUUUUUGCUGUGGAUG .......((((.((..((..(((((..((((----((...))))))..)))))..))..))))))..((((....))))........--((--(((.(((((...........))))).))))) ( -30.30, z-score = -2.40, R) >droSim1.chr2L 19989650 116 + 22036055 AGUCCCCGGAGACAAAGUUUACAUGCUAAGG----AUAAGAUCUUUUUCGUGUCUACAAUGCUCCAAGAGCAAAUGUUCGUUCAAAU--CA--UCAUUGGCAUUCUACAUUUUUGCUGUGGAUG .(((...((((.((..((..(((((..((((----((...))))))..)))))..))..))))))..((((....))))........--..--.....)))..((((((.......)))))).. ( -27.20, z-score = -1.13, R) >droSec1.super_18 307249 116 + 1342155 AGUCCCCGGAGACAAAGUUUACAUGCUAAGG----AUAAGAUCUUUUUCGUGUCUACAAUGCUCCAAGAGCAAAUGAUCGUUUAAAU--CA--UCCUUGGCAUUCGACAUUUUUGCUGUGGAUG .((((.(((..(.((.(((...(((((((((----((..(((......((.(((.....(((((...)))))...))))).....))--))--))))))))))..))).)).)..))).)))). ( -30.30, z-score = -1.79, R) >droYak2.chr2R 6785815 101 + 21139217 CGUCUCCGGAGACAAAGUUUACGUGCUAAGG----ACAAGAUCUUUUUCGUGUCUACAAUGCGCCAAGAAU---------------U--CA--UCCCUGGAAUUUUAUAUUUCGGUUUUGGAUG .((((....)))).........((((...((----(((.((......)).))))).....)))).......---------------.--((--((((((((((.....)))))))....))))) ( -24.10, z-score = -0.95, R) >droEre2.scaffold_4845 18577141 116 - 22589142 CGUCUCCGGAGACAAAGUUUACAUGCUAAGG----UCCACAUCUUUUUCGUGUCUACAAUGCUCCAAGAAAAAUGUUUCGUUUAAAU--UA--UCCUUUGCAUUCUACAUUUUGGCUUUGGAUG ....(((((((.((..((..(((((..((((----.......))))..)))))..))..))))))(((.(((((((...((.((((.--..--...)))).))...)))))))..))).))).. ( -22.80, z-score = -0.98, R) >droAna3.scaffold_12916 3954660 121 + 16180835 --UUUGUGGAGACAAAGUUUACAUGUUGAAG-UCCUUACAAUCUUCCUCGUGUCUACAACGCUCCUAGAACAGCCCCCAACUCGAACGGCACAUCCUCUGUAAUGAAUCAUAUUACAAUAGACG --..(((((((.....((..(((((..((((-..........))))..)))))..))....)))).......(((............)))))).....(((((((.....)))))))....... ( -21.60, z-score = -0.40, R) >droPer1.super_10 1677090 119 + 3432795 -UUUCCUGGAGCUAAAGUG-GCAUAUUUCUG-AACAAACCUUCAGAUUCGUGUCUCAAACACUCCGAUAGUAACCAGAUAGACGAACGGCA--UCCUGAAUAAUCCCUCAUAUUAUAACAGACG -.(((..((((((...(.(-((((...((((-((......))))))...))))).)....(((.....)))................))).--))).)))........................ ( -18.60, z-score = 0.42, R) >dp4.chr4_group4 2668566 114 + 6586962 ------UGGAGCUAAAGUG-GCAUAUUUCUG-AACAAACCUUCAGAUUUGUGUCUCAAAUACUCCAAUAAUAACUAGAUAGACGAACGGCA--UCCUGAAUAAUCCCUCGUAUUAUAACAGACG ------(((((.......(-(((((..((((-((......))))))..)))))).......))))).......((..((((((((..((.(--(........)).)))))).))))...))... ( -23.84, z-score = -1.98, R) >droWil1.scaffold_180764 2080976 120 + 3949147 GUUAUACGGAGCCAAAGUA-GCAUAUUU-AGUUUUCAUUCUUACAAUUUGUGUCUCAAAUGCUCCGAGAUGAACUUUAAAUCCGAACGGCA--UCCUGUUUAAUCCUUCAUAUUAAAACAGAUG ((..(.((((((.......-))...(((-((..(((((.(((...(((((.....))))).....))))))))..))))))))).)..)).--..((((((..............))))))... ( -19.64, z-score = -0.49, R) >droVir3.scaffold_12963 2584498 117 - 20206255 -CGCUUAGGAGUCAAAGUG-GCAUAUUUUGGGAAUUAAAC--CGAAUUUGUGUCUCAAAUGCUCCAAAACUAACUAAA-AGACGAACGGCA--UCCUGUAUAAUCACUUAUAUUAUAACAGAUG -.(((..(((((....(.(-(((((.(((((........)--))))..)))))).)....)))))....((.......-))......))).--..(((((((((.......))))).))))... ( -23.90, z-score = -1.48, R) >droMoj3.scaffold_6500 9689321 102 - 32352404 --------UAACUAAAAUCUAUA-GUUUAGU-------UAAUCUAACCUUUAUCGAUAGUUAUGUGGAGGCAAAGCCUGAUC---GUGUCA---CCGUAGUGUUCAGCACCAUUUUUAGGGACG --------((((((((.......-.))))))-------))......(((((((..........))))))).....(((((..---((((((---(....)))....)))).....))))).... ( -16.50, z-score = 0.93, R) >consensus _GUCUCCGGAGACAAAGUUUACAUGUUAAGG____AAAACAUCUUAUUCGUGUCUACAAUGCUCCAAGAGCAACUAUUCAUUCGAAUG_CA__UCCUUGGUAUUCAAUAUUAUUACUAUGGAUG .......((((.((......(((((..((((...........))))..)))))......))))))........................................................... ( -8.27 = -7.07 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:16 2011