| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,364,976 – 20,365,081 |
| Length | 105 |
| Max. P | 0.982268 |
| Location | 20,364,976 – 20,365,081 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.90 |
| Shannon entropy | 0.36812 |
| G+C content | 0.35686 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.78 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20364976 105 - 23011544 CUAUCUAUUCGUAUAACUUACACAAGCAGCUCUCAAAAGUUGCAUGGUGGCAACGUCGUAAAAUAGGUAAAAUACAAUAAGUCUAAUAUGUGUAGAAUCUAUGCC ...(((((.(((((.(((((.....((((((......))))))(((..(....)..)))..................)))))...))))).)))))......... ( -22.40, z-score = -2.05, R) >droEre2.scaffold_4845 18529686 87 + 22589142 ----------CUAUAACUUACACAAGCAGCUCUGAAAAGUUGCACGGCGGCAACCUCGUUAAAUAAGU--------UUUAAACUAAAGUGUGUAUAAUCUAUGCC ----------........((((((.((((((......))))))((((.(....).)))).........--------............))))))........... ( -17.70, z-score = -0.98, R) >droYak2.chr2R 6736692 92 - 21139217 ----CUAUCUAU-UCGUUUACACAAGCAGCUCUAAAAAACUGCAUGGCGGAAAAGUCGUAAGAUAAGU--------GUUAAAAUAAAGUGUGUAUAAUCUAUGCC ----........-.....((((((.((((..........))))(((((......))))).........--------............))))))........... ( -14.30, z-score = -0.10, R) >droSec1.super_18 258587 105 - 1342155 CUAUCUGUUCGUAUAACUUACACAAGCAGCUCUUAAAAGUUGCAUGGCGGCAACGUCGUAAAAUAAGUAAAAUACAAUAAGUCUAAAGUGUGUAUAAUCUAUGCC ..........(((((...((((((.((((((......))))))((((((....)))))).............................)))))).....))))). ( -25.20, z-score = -3.09, R) >droSim1.chr2L 19938293 105 - 22036055 CUAUCUGUUCGUAUAACUUACACAAGCAGCUCUUAAAAGUUGCAUGGCGGCAACGUCGUAAAAUAAGUAAAAUACAAUAAGUCUAAAGUGUGUAUAAUCUAUGCC ..........(((((...((((((.((((((......))))))((((((....)))))).............................)))))).....))))). ( -25.20, z-score = -3.09, R) >consensus CUAUCUAUUCGUAUAACUUACACAAGCAGCUCUUAAAAGUUGCAUGGCGGCAACGUCGUAAAAUAAGUAAAAUACAAUAAGUCUAAAGUGUGUAUAAUCUAUGCC ..................((((((.((((((......))))))((((((....)))))).............................))))))........... (-18.62 = -18.78 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:08 2011