| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,335,533 – 20,335,630 |
| Length | 97 |
| Max. P | 0.509393 |
| Location | 20,335,533 – 20,335,630 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.46 |
| Shannon entropy | 0.48851 |
| G+C content | 0.61101 |
| Mean single sequence MFE | -38.14 |
| Consensus MFE | -22.61 |
| Energy contribution | -24.65 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20335533 97 + 23011544 CGGCAGCCAGCGA---AUCAUCUGCCGCGCCAUUCGCUCCACCG-CAGAUCCAUUGGAGGCCCAC------ACGAGGAUCCCCGAUUUGGGGCGAGUGGGGCGUGUG .(((((.......---.....)))))((.((((((((((((.((-..(((((.(((..(.....)------.))))))))..))...)))))))))))).))..... ( -42.60, z-score = -1.50, R) >droSim1.chr2L 19909898 97 + 22036055 CGGCAGCCAGCGA---AUCAUCUGCCGCGCCAUUCGCUCCACCG-GAGAUCCAUUGGAGGCGCAC------ACGAGGAUCCACGAUUUGGGGCGAGUGGGGCGUGUG .(((((.......---.....)))))((.((((((((((((.((-..(((((.(((..(.....)------.))))))))..))...)))))))))))).))..... ( -44.30, z-score = -2.15, R) >droSec1.super_18 229180 97 + 1342155 CGGCAGCCAGCGA---AUCAUCUGCCGCGCCAUUCGCUCCACCG-GAGAUCCAUUGGAGGCGCAC------ACGAGGAUCCACGAUUUGGGGCGAGUGGGGCGUGUG .(((((.......---.....)))))((.((((((((((((.((-..(((((.(((..(.....)------.))))))))..))...)))))))))))).))..... ( -44.30, z-score = -2.15, R) >droEre2.scaffold_4845 18500074 103 - 22589142 CGGCAGCCAGCAGCGCAUCGUCGGCCGUCCCAUUCGGUCCGCCG-GAGAUCCACUGGAGACCCACUCGCGGAUGAGGAUCCCCGAUUUGGC---AGUGGGGCGUGUG ..((((((..(((.(.(((..((((.(.((.....)).).))))-..))).).))).....(((((.((.((...((....))...)).))---)))))))).))). ( -38.70, z-score = 1.00, R) >droWil1.scaffold_180764 1968550 96 + 3949147 CUGCAUCCA-CAU----UGAAGAAGAGCACAAGUGCAUCCGCAAUAAGAUCGAUUUGGAUCGUAU---CAAAUAAUUUAGCUAACUUUGGC---AUUGAGGCGUGUG ..((((((.-((.----((..(((((((.....(((....)))....(((((((....)))).))---)..........)))..))))..)---).)).)).)))). ( -20.80, z-score = -0.07, R) >consensus CGGCAGCCAGCGA___AUCAUCUGCCGCGCCAUUCGCUCCACCG_GAGAUCCAUUGGAGGCGCAC______ACGAGGAUCCACGAUUUGGGGCGAGUGGGGCGUGUG .(((((...............)))))((.((((((((((((......(((((.(((................)))))))).......)))))))))))).))..... (-22.61 = -24.65 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:00 2011