Locus 2585

Sequence ID	dm3.chr2L
Location	20,327,754 – 20,327,865
Length	111
Max. P	0.547657

overview

Window 9

Location	20,327,754 – 20,327,865
Length	111
Sequences	10
Columns	112
Reading direction	reverse
Mean pairwise identity	69.47
Shannon entropy	0.64123
G+C content	0.50113
Mean single sequence MFE	-35.34
Consensus MFE	-9.43
Energy contribution	-9.98
Covariance contribution	0.55
Combinations/Pair	1.42
Mean z-score	-1.93
Structure conservation index	0.27
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.11
SVM RNA-class probability	0.547657
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 20327754 111 - 23011544
CGGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGGCAGCCCCAGAAAUGGGUUUCAAUGGGUUGGG-UUUCGUCCAGCGAGAGCCACG
.(((((((((((((((((...............)))))).......(((((.....)))))..((((....)))).)))))))))))((.-(((((.....))))).))... ( -42.36, z-score =  -3.08, R)
>droAna3.scaffold_12916 8650875 112 + 16180835
CAGCCCAUUGAGGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGCCAGGCCAAGAAAUGGAUUUCAAUGGGUUGGGUUUUUGGUUGAAAAGAGCCGGG
((((((((((((((((((...............))))))((((((..(((...........)))......))))))))))))))))))(((((((.......)))))))... ( -37.16, z-score =  -1.89, R)
>droEre2.scaffold_4845 18492259 111 + 22589142
CGGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGGCAGCCCCAGAAAUGGGUUUCAAUGGGUUGGG-UUUCGUCCAGCGAGAGCCACG
.(((((((((((((((((...............)))))).......(((((.....)))))..((((....)))).)))))))))))((.-(((((.....))))).))... ( -42.36, z-score =  -3.08, R)
>droYak2.chr2R 6699502 111 - 21139217
CGGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGGCAGCCCCAGGAAUGGGCUUCAAUGGGUUGAG-UUUCGUCCAGCGAGAGCCACG
((((((((((((((((((...............))))))((((((.(((((.....))))).((...)).))))))))))))))))))..-(((((.....)))))...... ( -38.86, z-score =  -2.05, R)
>droSec1.super_18 217037 111 - 1342155
CGGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGGCAGCCCCAGAAAUGGGUUUCAAUGGGUUGGG-UUUCGUCCAGCGAGAGCCACG
.(((((((((((((((((...............)))))).......(((((.....)))))..((((....)))).)))))))))))((.-(((((.....))))).))... ( -42.36, z-score =  -3.08, R)
>droSim1.chr2L 19900565 111 - 22036055
CGGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGGCAGCCCCAGAAAUGGGUUUCAAUGGGUUGGG-UUUCGUCCGGCGAGAGCCACG
((((((((((((((((((...............)))))).......(((((.....)))))..((((....)))).))))))))))))((-......))(((....)))... ( -43.66, z-score =  -3.01, R)
>droVir3.scaffold_12963 8332043 99 + 20206255
CAGCCCAUUCAGGUGAUGCUUUAAUGAGUCCUUUAUCACGUCGACUCGCAUGUACCAUGUA--CGCGAGAGACUGUGGCAUGGCAAUGGCAUAGCUAUAAG-----------
..(((((.....(((((((((....)))).....)))))(((..(((((..((((...)))--)))))).))))).)))(((((.........)))))...----------- ( -27.00, z-score =  -0.30, R)
>droGri2.scaffold_15126 2980549 100 + 8399593
CAGCCCAUUCAGGUGAUGCUUUAAUGAGUCCUUUAUCACGUCGACUCGCAUGUAGCUAGCAACUACGCGAGUCUGUUGUACGAC-UUGCCAUGGCCAUAAG-----------
..(((....(((((..(((..((.(((........)))....(((((((..((((.......)))))))))))))..)))..))-)))....)))......----------- ( -25.40, z-score =  -0.43, R)
>droPer1.super_10 1581921 89 - 3432795
CAGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCAUGUCCAUGUGGCAUGGCUGGGCUCGGGUUGAAAUGGGAU--GGUAGGGUAAGA---------------------
(((((((((((((.....)))))))((((((....(((((((.....)))))))..)))))))))))).........--............--------------------- ( -27.90, z-score =  -1.46, R)
>dp4.chr4_group4 2572366 89 - 6586962
CAGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCAUGUCCAUGUGGCAUGGCUGGGCUCUGGUUGAAAUGGGAU--GGUAGGGUAAGA---------------------
..((((..((..((..(((((((((((((((....(((((((.....)))))))..))))))..)))))))))..))--..))))))....--------------------- ( -26.30, z-score =  -0.95, R)
>consensus
CAGCCCAUUGAAGUGAUGUUUUAAUGAGUCCUUUAUCACGUCCAUGUGCCACGAACUGGCAGCCCCAGAAAUGGGUUUCAAUGGGUUGGG_UUUCGUCCAGCGAGAGCCACG
.((((((((((.((((((...............)))))).)).............(((.......))).))))))))................................... ( -9.43 =  -9.98 +   0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:54:00 2011