Locus 2584

Sequence ID	dm3.chr2L
Location	20,270,466 – 20,270,587
Length	121
Max. P	0.598907

overview

Window 8

Location	20,270,466 – 20,270,587
Length	121
Sequences	9
Columns	127
Reading direction	forward
Mean pairwise identity	83.32
Shannon entropy	0.34437
G+C content	0.39602
Mean single sequence MFE	-25.74
Consensus MFE	-16.87
Energy contribution	-17.53
Covariance contribution	0.67
Combinations/Pair	1.14
Mean z-score	-1.54
Structure conservation index	0.66
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.22
SVM RNA-class probability	0.598907
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 20270466 121 + 23011544
UUUUGUUAGCCAUCGGAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAGUAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCAUGCGAAAGCACACUCCCCAGUACUU------
........((..(((((((..((((((((....(((....))).....(((((((......)).))))))))))))).))))))))).........(((....)))...............------ ( -28.50, z-score =  -2.18, R)
>droSec1.super_18 178650 120 + 1342155
UUUUGUUAGCCAUCGGAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAGAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCGAAAGCACGACACACCUCCAC-------
........((..(((((((..((((((((....(((....))).....(((((...........))))))))))))).)))))))))......((((((....))))).)..........------- ( -33.80, z-score =  -3.76, R)
>droYak2.chr2R 6661056 115 + 21139217
UUUUGUUAGCCAUCGGAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAGAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCAAAAGCACGUCACACA------------
........((..(((((((..((((((((....(((....))).....(((((...........))))))))))))).)))))))))......((((((....))))))......------------ ( -30.90, z-score =  -3.10, R)
>droEre2.scaffold_4845 18447293 121 - 22589142
UUUCGUUGGCCAUCGGAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAGAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCAAAAGCACGACACACGCCCCGG------
...((..(((..(((((((..((((((((....(((....))).....(((((...........))))))))))))).)))))))........((((((....))))).)....))).)).------ ( -33.50, z-score =  -2.49, R)
>droAna3.scaffold_12916 7546429 115 - 16180835
UUUCUUUAUCCAUUGGUGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAAAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCAAAAACACGCUCCUCC------------
...........((((.((((.((((((((....(((....))).....(((((...........)))))))))))))...))))..))))...(((((......)))))......------------ ( -23.00, z-score =  -1.62, R)
>dp4.Unknown_singleton_421 20 121 - 708
UCCUGUUAUUCAUUGAAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAAAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCAAAAACACACAUAGGUCUCCCU------
.(((((.....((((..(((.((((((((....(((....))).....(((((...........)))))))))))))...)))...))))...(.(((......))).)))))).......------ ( -22.00, z-score =  -1.11, R)
>droPer1.super_5 2934443 121 + 6813705
UCCUGUUAUUCAUUGAAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAAAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCAAAAACACACACAGGUCUCCCC------
.(((((.....((((..(((.((((((((....(((....))).....(((((...........)))))))))))))...)))...))))...(.(((......))).)))))).......------ ( -23.90, z-score =  -1.71, R)
>droWil1.scaffold_180772 8886206 115 + 8906247
AUUUGUUAUUCAUUGGUGGACAAUUUUGCCAGCUGCAUAUACAAACAAUUACCGCAAAAUAAAAGGCAAACACAAUUACUUCCAAGCAAUUUCUCUUGCGAAAACAUGAUGCACA------------
.((((((((.((((((..((....))..)))).)).))).)))))........(((........((...............))..((((......))))..........)))...------------ ( -15.76, z-score =   1.11, R)
>droGri2.scaffold_15252 1841575 126 + 17193109
AUUUGUUAUUCAUUGGGGGACAAUUUUGCCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAAAAGGUAAACAAAAUGACUUCCGAGCAAUUUCGCGUACAAAAACAU-ACAUUCAAUGCCACCGCCC
.(((((......(((((((...((((((.....(((....))).....(((((...........))))).))))))..)))))))((......))..))))).....-................... ( -20.30, z-score =   0.95, R)
>consensus
UUUUGUUAUCCAUUGGAGGACAAUUUUGUCAGCUGCAUAUGCAAACAAUUACCGCAAAAUAAAAGGUAAACAAAAUUACUUCCGAGCAAUUUCGCGUGCAAAAACACGACACACA_UCCC_______
....(((.....(((((((..((((((((....(((....))).....(((((...........))))))))))))).)))))))(((........)))...)))...................... (-16.87 = -17.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:59 2011