Locus 2582

Sequence ID	dm3.chr2L
Location	20,262,606 – 20,262,697
Length	91
Max. P	0.530659

overview

Window 5

Location	20,262,606 – 20,262,697
Length	91
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	65.86
Shannon entropy	0.55099
G+C content	0.27540
Mean single sequence MFE	-15.85
Consensus MFE	-7.47
Energy contribution	-6.98
Covariance contribution	-0.50
Combinations/Pair	1.50
Mean z-score	-1.18
Structure conservation index	0.47
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.07
SVM RNA-class probability	0.530659
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 20262606 91 - 23011544
UAUGUUAAUUACAAUAAUUAAUGUGGUAACACACCCAGUGAUGUGAUGCAAAAAUGUAAAACGUAAAUUCUAAUAUGUUUUAUAUCUGUAU
(((((((((((...)))))))))))....((((........))))(((((...((((((((((((........)))))))))))).))))) ( -17.50, z-score =  -1.47, R)
>droWil1.scaffold_180772 8874718 80 - 8906247
GAAAUCGGUAAAUGUUUUUAUUUUGGUAA-AGAGCUAAC--UCUCUUAACAAAAAGAGAAUCGAAUAGUUUUCUAGCUUUUAG--------
...(((((((((....)))))..)))).(-(((((((..--((((((......))))))...(((.....)))))))))))..-------- ( -14.70, z-score =  -0.94, R)
>droSec1.super_18 170831 84 - 1342155
UACGUUAAUUACAAUAAUUAAUGUGGCAACACAGCCAGUGAUGUGAUGCCAAAAUGUAAAACCUUAAUUCUAAUAUGUUGUAUA-------
.((((((((((...))))))))))((((.((((........)))).))))..................................------- ( -16.90, z-score =  -1.41, R)
>droSim1.chr2L 19853937 91 - 22036055
UACGUUAAUUACAAUAAUUAAUGUGGCAAAACACCCAGUGAUGUGAUGCAAAAAUGUAAAACCUAAGUUCUAAUAAGUUGUAUAUAUUAAA
(((((((((((...))))))))))).............(((((((.(((((.....((.(((....))).)).....)))))))))))).. ( -14.30, z-score =  -0.90, R)
>consensus
UACGUUAAUUACAAUAAUUAAUGUGGCAACACACCCAGUGAUGUGAUGCAAAAAUGUAAAACCUAAAUUCUAAUAUGUUGUAUA_______
(((((((((((...)))))))))))(((.((((........)))).))).......................................... ( -7.47 =  -6.98 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:56 2011