| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,261,364 – 20,261,471 |
| Length | 107 |
| Max. P | 0.836762 |
| Location | 20,261,364 – 20,261,471 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 66.90 |
| Shannon entropy | 0.58347 |
| G+C content | 0.36040 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -11.81 |
| Energy contribution | -10.23 |
| Covariance contribution | -1.58 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.836762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20261364 107 - 23011544 GAGGAUAAGAGUGUGUGUCCUUGAAAAUUCGAGGCAAUUAAAACUAUAAUAUCUUUUCAAUUGAAACAUACCCGUGUCGAAUCAUAAAGAUAGUUGUAUCACAGCUC---------------- ........(((((((((.((((((....))))))))........((((((((((((....((((.((......)).)))).....)))))).)))))).)))).)))---------------- ( -21.90, z-score = -1.48, R) >droSim1.chr2L 19851761 107 - 22036055 GAGGAUAAGAGUGUGUGUCCUUGGAAAUUCAAGGCAAUUAAAACUAUAAUAUCUUUUCAAUUGAGACAUACCCGUGUCGAAUCAUAAAGAUAGUUGUAUCACUGUUU---------------- ......((.((((..((.((((((....))))))))........((((((((((((...(((..(((((....))))).)))...)))))).)))))).)))).)).---------------- ( -21.70, z-score = -0.93, R) >droSec1.super_18 169572 107 - 1342155 GAGGAUAAGAGUGUGUGUCCUUGGAAAUUCAAGGCAAUUAAAACUAUAAUAUCUUUUCAAUUGAGACAUACCCGUGUCGAAUCAUAAAGAUAGUUGUAUCACUGUUU---------------- ......((.((((..((.((((((....))))))))........((((((((((((...(((..(((((....))))).)))...)))))).)))))).)))).)).---------------- ( -21.70, z-score = -0.93, R) >droYak2.chr2R 6651929 93 - 21139217 GAGAAUAGGAGUAUGGAUUCUUGAAACUCCAAGAC--------------UAUCUUUUCGAUUGAGACAUACCCGUGUUGUAUCAUAAAGAUAGCUGUAUCACUGUUA---------------- ...(((((..((((((..(((((......)))))(--------------(((((((..(((...(((((....)))))..)))..))))))))))))))..))))).---------------- ( -26.20, z-score = -2.81, R) >droEre2.scaffold_4845 18435100 107 + 22589142 GGGAACAAGAGUGUGAUUCCUUGGAACUUCAAGGCAAUUAAAACUAUAAUAUCUUUUCGAUUGAGACACACCCGUGUUGAAUCGUAAAGAUAGCUGUAUCGCUGUUU---------------- ..(((((.((...(((((((((((....)))))).)))))....((((.(((((((.(((((..(((((....))))).))))).)))))))..))))))..)))))---------------- ( -29.00, z-score = -2.51, R) >droAna3.scaffold_12916 7536510 119 + 16180835 GGCGAUAGUCCUUGGUCUCUAUAGUCCUCUGAAAU--UCAAUUAGAGAAGAUGAGUUUAAACUACAGAGG-CUGUAUCAAAUGGUACUUGGAGGAGC-UCAUAGUUAUGGUGUAUCUAAGAUC ...((((.((((((((((((.((((......((((--(((.((.....)).)))))))..)))).)))))-))(((((....)))))...)))))((-.(((....))))).))))....... ( -26.70, z-score = 0.52, R) >consensus GAGGAUAAGAGUGUGUGUCCUUGGAAAUUCAAGGCAAUUAAAACUAUAAUAUCUUUUCAAUUGAGACAUACCCGUGUCGAAUCAUAAAGAUAGUUGUAUCACUGUUU________________ ...((((.(.(((((...((((((....)))))).................((((.......))))))))).).))))............................................. (-11.81 = -10.23 + -1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:55 2011