| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,260,363 – 20,260,466 |
| Length | 103 |
| Max. P | 0.913728 |
| Location | 20,260,363 – 20,260,466 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.49 |
| Shannon entropy | 0.38574 |
| G+C content | 0.47928 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -13.45 |
| Energy contribution | -13.45 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20260363 103 + 23011544 --GUUGGAGGCUCCGCCAGA-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG----GAGACCACAACCCGG-- --((((..((((((....((-----((((((((.((((....((((.(((..(.......)..))).))))....)))).))))))))))....)----))).)).))))....-- ( -38.30, z-score = -4.06, R) >droPer1.super_5 3859427 105 - 6813705 -----------ACCACCAGUGUGUCGGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUUGUGCAUAAAUUUCGGUUUAUGGGCACCCACGGACCACGGGGCCCAGGCUCAGGC -----------....((.(((.(((((((((((.((((....((((.((((((.......)))))).))))....)))).)))))).))....)))))).((((....)))).)). ( -36.20, z-score = -2.18, R) >dp4.Unknown_group_670 18829 105 - 31339 -----------ACCACCAGUGUGUCGGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUUGUGCAUAAAUUUCGGUUUAUGGGCACCCACGGACCACGGGGCCCAGGCUCAGGC -----------....((.(((.(((((((((((.((((....((((.((((((.......)))))).))))....)))).)))))).))....)))))).((((....)))).)). ( -36.20, z-score = -2.18, R) >droAna3.scaffold_12916 7535907 105 - 16180835 --GUUGGAGGCUCCGCCCGCGU---CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG----GAGACCACGACCCGG-- --((((..((((((.(..(((.---((((((((.((((....((((.(((..(.......)..))).))))....)))).)))))))).))).))----))).)).))))....-- ( -38.90, z-score = -3.00, R) >droEre2.scaffold_4845 18434386 103 - 22589142 --GUCGGAGCCUCCGCCAGA-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG----GAGACCACAACCCGC-- --..(((.......((..((-----((((((((.((((....((((.(((..(.......)..))).))))....)))).)))))))))))).((----....)).....))).-- ( -34.20, z-score = -3.03, R) >droYak2.chr2R 6651197 103 + 21139217 --GUUGGAGGCUCCGCCAGA-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG----GAGACCACAACCCGG-- --((((..((((((....((-----((((((((.((((....((((.(((..(.......)..))).))))....)))).))))))))))....)----))).)).))))....-- ( -38.30, z-score = -4.06, R) >droSec1.super_18 165512 103 + 1342155 --GUUGGAGGCUCCGCCAGA-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG----GAGACCACAACCCGG-- --((((..((((((....((-----((((((((.((((....((((.(((..(.......)..))).))))....)))).))))))))))....)----))).)).))))....-- ( -38.30, z-score = -4.06, R) >droSim1.chr2L 19850668 103 + 22036055 --GUUGGAGGCUCCGCCAGA-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG----GAGACCACAACCCGG-- --((((..((((((....((-----((((((((.((((....((((.(((..(.......)..))).))))....)))).))))))))))....)----))).)).))))....-- ( -38.30, z-score = -4.06, R) >droVir3.scaffold_12723 107875 93 - 5802038 ---------ACACAGCCAGU-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUUGUGCAUAAAUUUCGGUUUAUGGGA---CGCUGG----GAGACCACGACCCGG-- ---------......((.((-----((.(((((.((((....((((.((((((.......)))))).))))....)))).))))).---...(((----....)))))))..))-- ( -28.40, z-score = -3.05, R) >droMoj3.scaffold_6500 21047035 94 - 32352404 ---------CAGCCGCCAGU----UGGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUUGUGCAUAAAUUUCGGUUUAUGGGA---CGCAGU----GAGACCACGACCCAG-- ---------...........----(((((((((.((((....((((.((((((.......)))))).))))....)))).))))).---....((----(....)))..)))).-- ( -24.70, z-score = -1.86, R) >droGri2.scaffold_15252 1828787 91 + 17193109 -----------CUAGCCAGU-----CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUUGUGCAUAAAUUUCGGUUUAUGGGA---UGCUGG----GAGACCACGGCCCGA-- -----------...((((((-----...(((((.((((....((((.((((((.......)))))).))))....)))).))))).---.)))((----....))..)))....-- ( -28.90, z-score = -2.55, R) >droWil1.scaffold_180772 34776 106 - 8906247 AUGUAGGAGCUCCCUCCACCAU--UCGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGG---CGCAGG----GAGACCACGACCCGAG- (((..((((....))))..)))--(((((((((.((((....((((.(((..(.......)..))).))))....)))).))))).---....((----....)).....)))).- ( -28.80, z-score = -1.39, R) >consensus __GU_GGAGGCUCCGCCAGA_____CGGCCUAUUAACCACAUUUUAAGCAUAAUUGAAUUUCGUGCAUAAAUUUCGGUUUAUGGGUCGUCGCAGG____GAGACCACGACCCGG__ ............................(((((.((((....((((.((((((......)).)))).))))....)))).)))))............................... (-13.45 = -13.45 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:54 2011