| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,884,505 – 1,884,617 |
| Length | 112 |
| Max. P | 0.631076 |
| Location | 1,884,505 – 1,884,617 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 58.25 |
| Shannon entropy | 0.80327 |
| G+C content | 0.47354 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -9.00 |
| Energy contribution | -10.12 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1884505 112 - 23011544 AUUAUGUGUUCAGUGUGACCAGAGGGGUGACAGUUCAAGAACGAGUUGGCAUCCCCAGUCGUAUUUGAAAUGCUAAUGUGACC--------AGAGUGCCAAAAUACGGUCAGGCUAAUAG ......((((.(((.(((((.....(((.(((.((((((.((((.((((.....)))))))).)))))).......))).)))--------...(((......)))))))).))))))). ( -31.80, z-score = -1.63, R) >droEre2.scaffold_4929 1930035 109 - 26641161 GCGCGGGGCUCAGUGUGACCAGAGCGGCAACGGUGCCCGGGCGAGUUGGCAUCUCCGCCCA-GCUUGAAAUCCCGAAGUAAAAAUACCGCAAAACAAUUGUAAGGUAUCG---------- .(((..((.((.....))))...)))....((((((((((((((((((((......).)))-)))))....)))).............((((.....))))..)))))))---------- ( -33.00, z-score = 0.40, R) >droYak2.chr2L 1867520 107 - 22324452 AUUUGGUGCGCAGUGUGACCAGAGGGGAAACAGUGCCAG-ACGAGUUGGCAUCCCCAGUCGCAUUUGAAAUCCCAAUAUGACCAGAGCCUGAGAGUGCAAAAAUACAU------------ ((((..(((((((((((((....(((((.....((((((-.....))))))))))).)))))))).................(((...)))...))))).))))....------------ ( -30.50, z-score = -1.55, R) >droSec1.super_14 1832087 117 - 2068291 UUUCUGCAUUCAGUGUGACCAGAGGGAAAACAGUGCCAGAACGAGUUGGCAU-CCCAGUCGCAUUUGAAAUGCCAAAGAGACCAGAACGCGAGAGUGUAAAAAUACGGU--GCGCAAUAG (((((((((((((((((((....((((......((((((......)))))))-))).)))))).))).)))))...)))))......((((...((((....))))..)--)))...... ( -33.20, z-score = -2.24, R) >droSim1.chr2L_random 95948 120 - 909653 UUUCUGCGUUCAGUGCGACCAGAGGGAAAACAGUGCCAGCACGAGUUGGCAUCCCCAGUCGCAUUUGAAAUGCCAAAGAGACCAGAGAGAGAGAGUGUAAAAAUACGGUGAGCGCAAUAG ....(((((((((((((((..(.((((......(((((((....)))))))))))).))))))))......(((...(....)...........((((....)))))))))))))).... ( -39.00, z-score = -3.95, R) >droGri2.scaffold_14978 928221 102 - 1124632 CUUAACUGCUC-GUGGAGCUUGCAAGAUAUUUG-GUUUGAACUAGCUACUAAUAAGCAAUUUGUUUGCAAUA--AAUUCGAU----GCUUAAAUGCGUAAAAACACAUCA---------- ...........-(((..((..(((((.....((-((....))))(((.......)))..)))))..))....--......((----((......)))).....)))....---------- ( -16.50, z-score = 0.95, R) >consensus AUUCUGUGCUCAGUGUGACCAGAGGGAAAACAGUGCCAGAACGAGUUGGCAUCCCCAGUCGCAUUUGAAAUGCCAAAGUGACCAGAGCGCGAGAGUGUAAAAAUACAGU___________ ...........((((((((....((((.....(((((((......))))))))))).))))))))....................................................... ( -9.00 = -10.12 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:33 2011