| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,257,487 – 20,257,578 |
| Length | 91 |
| Max. P | 0.628940 |
| Location | 20,257,487 – 20,257,578 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 84.59 |
| Shannon entropy | 0.21767 |
| G+C content | 0.31012 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -12.78 |
| Energy contribution | -13.57 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20257487 91 + 23011544 UAACUCCAACGACUAAUACUUC------GGUCUGUUCAAAAGAACUUAGGCUUUAAUAUAUUGUUGAACUUUCAGCCUAAAAUAAAUGUAAUGUAAU----- ..........((((........------)))).((((....))))((((((((((((.....)))))......))))))).................----- ( -13.10, z-score = -1.05, R) >droSim1.chr2L 19847536 101 + 22036055 UAAAUCCAACGAAUUAUACUUUCCCAUAGGUCUGUUCAAA-GAACUUAGGCUUUAACAUAUUGUUGAACUUUCGGCCUAAGAUACAUGUAAUUCAAUAAUCU ..........((((((((............(((......)-)).(((((((((((((.....)))))......)))))))).....))))))))........ ( -20.70, z-score = -2.76, R) >droSec1.super_18 162646 101 + 1342155 UAACUCCAACGAAUUAUACUUACCCAUAGGUCUGUUCAAA-GAACUUAGGCUUUAACAUAUUGUUGAACUUUCGGCCUAAGAUAAAUGUAAUUAAAUAACCU ..........((((...(((((....)))))..))))...-...(((((((((((((.....)))))......))))))))..................... ( -17.40, z-score = -1.59, R) >consensus UAACUCCAACGAAUUAUACUUACCCAUAGGUCUGUUCAAA_GAACUUAGGCUUUAACAUAUUGUUGAACUUUCGGCCUAAGAUAAAUGUAAUUAAAUAA_CU ..........((((((((...............((((....))))((((((((((((.....)))))......)))))))......))))))))........ (-12.78 = -13.57 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:53 2011