| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,255,046 – 20,255,137 |
| Length | 91 |
| Max. P | 0.833628 |
| Location | 20,255,046 – 20,255,137 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 66.11 |
| Shannon entropy | 0.58551 |
| G+C content | 0.45307 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -8.82 |
| Energy contribution | -9.54 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.833628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20255046 91 + 23011544 -AAGCAACAACACCCUGUCGCCCCACAGGCGACAGACAGCCCCAAAAUAUGCAAAGAAUUGUGCACUAAGUGGGAGUUGACAAACUUGGCCA -..((.........((((((((.....)))))))).((((((((.....((((........)))).....)))).)))).........)).. ( -30.70, z-score = -3.40, R) >droSec1.super_18 160435 87 + 1342155 -AAGCAACAACACCCUGUCGCCCCAAAGGCGACAG----CCCCAAAAUAUGCAAAGAAUUGUGCACUAAGUGGGAGUUGACAAACUCGGCCA -......((((...((((((((.....))))))))----.((((.....((((........)))).....)))).))))............. ( -27.70, z-score = -2.84, R) >droEre2.scaffold_4845 18429435 73 - 22589142 ------------------CAGCAAGAAGGCGCCAGACA-GUCCAAAAUAUGCAAAGAAUUGUGCACUAAAUGGGAGUUGACAAACUUGGCCA ------------------..((......))(((.....-..(((.....((((........)))).....)))(((((....)))))))).. ( -14.30, z-score = 0.31, R) >droYak2.chr2R 6646054 73 + 21139217 -------------------AGGCAAAAGGCGACAGACAGCCCCAAAAUAUGCAAAGAAUUGUGCACUAAAUGGGAGUUGACAAACUUGGCCA -------------------.(((....(....)...((((((((.....((((........)))).....)))).)))).........))). ( -19.30, z-score = -1.53, R) >droWil1.scaffold_180772 8864471 80 + 8906247 AAAAGAAAAUCCUUGCAAGGAGACACAAGCAACAG----CCUGAAAAUAUGCAAAGAAUUGUUAA--GAGUGAGAGUUAAACAACA------ .........((.(((((.(....).((.((....)----).))......))))).)).(((((..--.(((....))).)))))..------ ( -10.40, z-score = -0.47, R) >consensus _AA__AA_A_C_______CGCCCCAAAGGCGACAGACA_CCCCAAAAUAUGCAAAGAAUUGUGCACUAAGUGGGAGUUGACAAACUUGGCCA ...........................(((..........((((.....((((........)))).....)))).(((....)))...))). ( -8.82 = -9.54 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:53 2011