| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,247,210 – 20,247,308 |
| Length | 98 |
| Max. P | 0.740321 |
| Location | 20,247,210 – 20,247,308 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 93.20 |
| Shannon entropy | 0.09370 |
| G+C content | 0.30612 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -15.97 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20247210 98 + 23011544 UUCCUAUCUUUGUCUUUUGCCUGUUUAAAUGUAUCCAACAUGGAUGCGGAUACUAAAGGUUUCGUUAUAAACAUUAAUUUUGUCUUUGUUGACAACAU ........(((((.....((((.......(((((((.....)))))))........))))......)))))........(((((......)))))... ( -18.06, z-score = -1.39, R) >droSec1.super_18 152276 98 + 1342155 UUCCUAUCUUUGUAUUUUGCCCGUUUAAAUGUAUCCAACAUGGAUACGUAUACUAAUGGUAUCCUUAUAAACAUUAAUUUUGUCUUUGUUGGCAAUAU ........((((((......(((((...((((((((.....)))))))).....)))))......))))))........(((((......)))))... ( -19.10, z-score = -2.26, R) >droSim1.chr2L 19836921 98 + 22036055 UUCCUAUCUUUGUCUUUUGCCUGUUUAAAUGUAUCCAACAUGGAUACGUAUACAAAUGGUAUCCUUAUAAACAUUAAUUUUGUCUUUGUUGGCAACAU ................(((((((((((.((((((((.....))))))))((((.....)))).....)))))).(((........)))..)))))... ( -17.80, z-score = -1.79, R) >consensus UUCCUAUCUUUGUCUUUUGCCUGUUUAAAUGUAUCCAACAUGGAUACGUAUACUAAUGGUAUCCUUAUAAACAUUAAUUUUGUCUUUGUUGGCAACAU ........(((((....((((....((.((((((((.....)))))))).)).....)))).....)))))........(((((......)))))... (-15.97 = -16.20 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:52 2011