| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,234,652 – 20,234,768 |
| Length | 116 |
| Max. P | 0.500000 |
| Location | 20,234,652 – 20,234,768 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.72 |
| Shannon entropy | 0.41522 |
| G+C content | 0.38806 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -16.18 |
| Energy contribution | -17.30 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 20234652 116 + 23011544 UGGUAAAAAGUUUAAUUUCCC-AAAGAACUUAGUUGAAUUCAUCUGGGGAAGCUGACUAUCGAGGGAAUGUACUGGGUUACUUAGCCACGGCAGAUGAAAAUACAAAUGUAUUUUUG .(((((..(((.....(((((-...((..((((((...(((....)))..))))))...))..)))))...)))...)))))..((....))....((((((((....)))))))). ( -25.20, z-score = -0.63, R) >droSim1.chr2L 19824333 116 + 22036055 UGGUAAAAAGUUUAAUUUCGC-CAAGAACUCAGAUGAAUUCUUCUGGGGAGGCUGACUAUCGAGGGAAUGUAUUGGGUAACUUAGCCACGGCAGAUGAAAAUACAAAUGUAUUUUCG ...................((-(.....((((((........))))))..((((((.((((.((........)).))))..))))))..)))....((((((((....)))))))). ( -31.60, z-score = -2.45, R) >droSec1.super_18 139733 116 + 1342155 UGGUAAAAAGUUUAAUUUCGC-CAAGAACUCAGAUGAAUUCAUCUGGGGAGGCUGACUAUCGAGGGAAUGUAUUGGGUAACUUAGCCACGGCAGAUGAAAAUACAAAUGUAUUUUCG ...................((-(.....((((((((....))))))))..((((((.((((.((........)).))))..))))))..)))....((((((((....)))))))). ( -35.80, z-score = -3.96, R) >droYak2.chr2R 6623909 116 + 21139217 UGGUAAAAAGUUUAAUUUCUC-CAAGAACCUAGAUGUAUUCAUCAGGGAAAGCUGACUAUCGAGGGAAUGUACGAAGUUACUUAGCCACGACAGAUGAAGAUACAAAUGUAUUUUUG ((((....(((((...(((..-...)))(((.((((....)))).))).))))).))))(((.((....(((......)))....)).))).....((((((((....)))))))). ( -21.90, z-score = -0.23, R) >droAna3.scaffold_12916 7506942 111 - 16180835 AGGUAAAAAGUUUCAUUUCCCACAAGGACUUGAA--AUUCGUUCUGGGAGAACUGGUUGCCGGGGGAAUCAAAUUGAAAGAAUGCCCACAAAAUUUGACAGAAAACAAGUCCC---- .(((((..(((((....(((((.((.((......--..)).)).))))))))))..)))))..((((.(((((((................)))))))...........))))---- ( -24.99, z-score = 0.36, R) >consensus UGGUAAAAAGUUUAAUUUCCC_CAAGAACUUAGAUGAAUUCAUCUGGGGAAGCUGACUAUCGAGGGAAUGUACUGGGUAACUUAGCCACGGCAGAUGAAAAUACAAAUGUAUUUUCG .((((...(((((...(((......)))((((((((....)))))))).)))))...)))).......(((....(((......)))...)))...((((((((....)))))))). (-16.18 = -17.30 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:49 2011