| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,200,379 – 20,200,471 |
| Length | 92 |
| Max. P | 0.989090 |
| Location | 20,200,379 – 20,200,471 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 48.38 |
| Shannon entropy | 0.86590 |
| G+C content | 0.36741 |
| Mean single sequence MFE | -19.01 |
| Consensus MFE | -8.14 |
| Energy contribution | -8.45 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20200379 92 - 23011544 -AAAAGGGAUGAGUGAGAAAAACACUUGUGGGUAUACCGUUAAACACAUGGGUGUUUCCAA-AAAUACUCGGGUGUUUCCAAAAAUACUCGAGU -.......(..((((.......))))..)(((.(((((............))))).)))..-....((((((((((((....)))))))))))) ( -25.70, z-score = -2.31, R) >droAna3.scaffold_13230 2726436 94 - 3602488 AAUGAGAGAUUAGUAAAAAUCAUGAUUGUGUCAAAAAAACAUGAGUAGUAAAAACACACAUGAAAGUCUUGAGUCUUUUCAGAAACACCUAGGU ..(((((((((........(((((..(((((.......((....)).......))))))))))........)))).)))))............. ( -13.23, z-score = 0.42, R) >droYak2.chr2R 3772948 70 - 21139217 ----------------AAAAGGGAUUAGUGG-----CAAAAAUACUCAUUUAUGUCU-CGU-AAACACCCGGGUGUCUAC-UAGACACUCGACU ----------------....(((....(.((-----((.((((....)))).)))).-)(.-...).)))(((((((...-..))))))).... ( -18.60, z-score = -2.47, R) >droSec1.super_60 79426 90 - 163194 -AAAAGGGAUAAGUGACAAUAGGACUAAUGGGUUUCUAGAAAAAAAUUUGGAUGACU-CGU-AAACACUUUGGUGUUUAG-UAGACACUCGUGU -.......(..((((............(((((((((((((......)))))).))))-)))-((((((....))))))..-....))))..).. ( -18.50, z-score = -1.10, R) >consensus _AAAAGGGAU_AGUGAAAAAAAGACUAGUGGGUAUACAAAAAAACACAUGGAUGUCU_CAU_AAACACUCGGGUGUUUAC_UAAACACUCGAGU ...................................................................(((((((((((....))))))))))). ( -8.14 = -8.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:49 2011