| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,184,182 – 20,184,287 |
| Length | 105 |
| Max. P | 0.757410 |
| Location | 20,184,182 – 20,184,287 |
|---|---|
| Length | 105 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 51.32 |
| Shannon entropy | 0.94221 |
| G+C content | 0.47818 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -8.42 |
| Energy contribution | -7.20 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 2.75 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20184182 105 + 23011544 -----AGUUGUUAACUACUCCCCCCCUAAGAUUAUGACCGUCCUCGGUUAUGUUGAGUUUAUCGAUGGUCUGUUGAAUCUCAGCGGAGGCUCGCCGUUUCCUUAAUGCCA------- -----.(..(((((...................(((((((....)))))))((((((....(((((.....)))))..))))))((((((.....)))))))))))..).------- ( -25.30, z-score = -1.17, R) >droSim1.chrU 13765379 97 - 15797150 -----CGUUGUUAACUACUCUCCCCUUAAAUUAGACGCCGUCCUUGGUGACAGCCAAUUCGUCAAUAGAUUUUUGCGACUGGGAU--GC---CUCCCGUUUGCGCCU---------- -----.(((((.............((......)).(((((....))))))))))....................((((.(((((.--..---.))))).))))....---------- ( -19.70, z-score = -0.16, R) >droYak2.chr2L 476437 87 - 22324452 -----CGUUGUUAACUACUCCCCCCUUAAAUUAGACGCCGUCCUCGGUGACAGCCAAUUCGUCAAUGGAUUUUUGCAACUGGGAU--GC---CUCCC-------------------- -----.(((((.......(((...((......)).(((((....))))).................))).....))))).((((.--..---.))))-------------------- ( -16.40, z-score = 0.32, R) >dp4.Unknown_singleton_2612 1860 100 - 8391 -----AUUUGUUAACUACUCCCUCCUUCAAGACUUGGCCGUCCUCGGUCAAGCACAAGUUUUUCAGCACCUGCUGGAUGGCGUUG--GCUGUUUCCUUCCCCUGUUU---------- -----....((((((...............(.((((((((....)))))))))....((..((((((....))))))..))))))--))..................---------- ( -27.70, z-score = -2.07, R) >droPer1.super_49 550367 100 + 569410 -----AUUUGUUAACUACUCCCUCCUCCAAGACUUGGCUGUCCUCGGUAGAGCUCAAUUUUUUCAACACUUGCUGAAUGGCGUUG--GUUGUUUCAUUCCGCUGCUU---------- -----.........(((((....(..(((.....)))..).....)))))(((..........((((...((((....))))...--)))).........)))....---------- ( -14.71, z-score = 1.59, R) >droWil1.scaffold_181075 681959 110 - 1141854 -----GUUUGUUAACUUCUCCCCUUCUAAGUUCAUUGCCGUCCUCGGUGAUGCAUGACUCUUGGACGAAUUUUUGCAGUUUAGCA--GCUGACUUCCUCUGGUACCUGCAGUAACCA -----....((((..((((((........((.(((..(((....)))..))).)).......))).)))...((((((..((.((--(..(....)..))).)).)))))))))).. ( -23.96, z-score = -0.51, R) >droVir3.scaffold_12970 865764 108 + 11907090 UAGUCAGUGGUUAACUACUCCCCCUCUCGAAGACCGACCGUCCUUGGUCGCGUUCAAGUCUUCCAGUAUCUGCGAGAUUUUUCGGGAGUUAUGGCGUUUGAUCACCAG--------- ......((((((((..((.((..(((((((((((((((((....)))))).))).(((((((.(((...))).)))))))))))))))....)).))))))))))...--------- ( -35.90, z-score = -2.80, R) >droMoj3.scaffold_6500 1065453 101 - 32352404 -----AUGUGUUAACUCCUCCCUCACUAGCUUGAAGAUCGUCCUCGGUUUUCCCCAAAGUGUCGAUGACAGCUCGUAUUGAGUUUU-GUUGUUUAUUCUCUUUGCAA---------- -----..(((.............)))......((((((((....))))))))..(((((.((.((..(((((((.....))))..)-))..)).))...)))))...---------- ( -18.62, z-score = -0.94, R) >consensus _____AGUUGUUAACUACUCCCCCCCUAAAUUAAUGGCCGUCCUCGGUGACGCCCAAUUCUUCCAUGAAUUGUUGCAUCUCGGUG__GCUGUCUCCUUUCCUUGCCU__________ ................................((((((((....))))))))................................................................. ( -8.42 = -7.20 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:48 2011