| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,183,843 – 20,183,902 |
| Length | 59 |
| Max. P | 0.997658 |
| Location | 20,183,843 – 20,183,902 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 57.18 |
| Shannon entropy | 0.71414 |
| G+C content | 0.42424 |
| Mean single sequence MFE | -11.02 |
| Consensus MFE | -6.60 |
| Energy contribution | -6.10 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.15 |
| SVM RNA-class probability | 0.997658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20183843 59 - 23011544 GGCUCGCAGCCGUAAAAUAUCAUUUUAUUAUUUGAACAUUCUC-GCUGAGCCAAAAGGCC (((((((....(((((((...))))))).....((......))-)).)))))........ ( -11.70, z-score = -0.97, R) >droYak2.chr2L 476061 56 + 22324452 GGCACUUAGCCGUUAAA--CCUUUUUAUUA--CAAAAUAUACCGGCUGAGUCAACCGGCC ((((((((((((.....--...........--..........)))))))))......))) ( -13.07, z-score = -1.89, R) >droWil1.scaffold_181075 681637 56 + 1141854 GGCACUUAGCCGAAACA---CAAUUUAUCAUCUCUAAUAUAUU-GCUGAUCCACAAGGAC (((.....)))....((---((((.(((........))).)))-).)).(((....))). ( -7.90, z-score = -1.47, R) >droMoj3.scaffold_6100 14387 53 - 46180 GGCAC-CAGCCGUAAAUUAAAAGUUCUUU-----UAUUCUCUCAGCCUAAGCGAGAGUC- (((..-..)))..................-----....(((((.((....)))))))..- ( -11.40, z-score = -1.99, R) >consensus GGCACUCAGCCGUAAAA___CAUUUUAUUA__U_AAAUAUAUC_GCUGAGCCAAAAGGCC (((.....)))......................................(((....))). ( -6.60 = -6.10 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:47 2011