| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,866,445 – 1,866,551 |
| Length | 106 |
| Max. P | 0.761684 |
| Location | 1,866,445 – 1,866,551 |
|---|---|
| Length | 106 |
| Sequences | 14 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 69.10 |
| Shannon entropy | 0.69854 |
| G+C content | 0.47352 |
| Mean single sequence MFE | -32.42 |
| Consensus MFE | -13.90 |
| Energy contribution | -12.22 |
| Covariance contribution | -1.67 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1866445 106 - 23011544 UUCGUGCUCGGUAACUUCUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGUGCUCCGAACUACCUGCUGGGUGAGUU-UAAUAUCGAAGUUA------------ ......(((((......)))))(((((.(((.((((.(((.((((((........)))))).))).)))))))((((((.....))).))).-.......)))))..------------ ( -36.20, z-score = -2.01, R) >droSim1.chr2L 1853817 118 - 22036055 UUCGUGCUCGGUAACUUCUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGAGCUCCGAAUUACCUGCUGGGUGAGUU-UAACAUCCAUGACCCAUUUGGGGUUA .....((..(((((((....))......(((.((((((((.((((((........)))))).))))))))))).))))).))((((((....-...))))))((((((.....)))))) ( -45.00, z-score = -2.63, R) >droSec1.super_14 1814578 118 - 2068291 UUCGUGCUCGGUAACUUCUGGGGCUUCAUCGAGAGCUUCUUGUUCCUGUACCUCAAGGAACUGGGAGCUCCCAACUACCUGCUGGGUGAGUU-UCACAUCCGUGACCCAUUCGAAGUUA .(((....)))(((((((((((........(.((((((((.((((((........)))))).)))))))).)(((((((.....))).))))-((((....))))))))...))))))) ( -40.70, z-score = -1.81, R) >droYak2.chr2L 1840527 97 - 22324452 UUUGUGCUCGGUAACUUUUGGGGCUUCAUCGAGAGCUUCCUGUUCUUGUAUCUCAAGGAACUCGGAGCUCCAAACUACCUGCUGGGUAAGUU-UUCCU--------------------- ....(((((((((...(((((((((((..(((((((.....)))))))..((.....))....))))))))))).....)))))))))....-.....--------------------- ( -33.00, z-score = -2.68, R) >droEre2.scaffold_4929 1913395 117 - 26641161 UUCGUGCUCGGUAACUUCUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGGGCUCCAAACUACCUGCUGGGUGAGUU-UAUCCGCCCUGGCCAAUUUG-AGUUA .....((((((......(..((((......(.((((((((.((((((........)))))).)))))))))((((((((.....))).))))-)....))))..).....)))-))).. ( -45.60, z-score = -2.63, R) >droAna3.scaffold_12916 460559 103 + 16180835 UUUGUUCUCGGAAAUUUCUGGGGCUUCAUCGAGAGUUUUCUGUUUUUGUAUCUUAAGGAGUUGGGUGCUCCCAACUAUUUGUUGGGUAAGU-----UGGAUUU---CAUUA-------- ........((((((.((((.((......)).)))).))))))..............((((((.(((...((((((.....))))))...))-----).)))))---)....-------- ( -24.70, z-score = -0.98, R) >dp4.chr4_group3 8601111 112 - 11692001 UUUGUUCUCGGCAACUUUUGGGGCUUCAUCGAGAGCUUUCUUUUCCUGUAUCUGAAGGAAUUGGGGGCACCCAACUAUCUGCUUGGUGAGUUCUCGUCGUCAUUAGUGGUUA------- .........(((.((....((((((.(((((((.(((..(..(((((........)))))..)..)))...((......))))))))))))))).)).)))...........------- ( -30.10, z-score = -0.30, R) >droPer1.super_1 10055128 112 - 10282868 UUUGUUCUCGGCAACUUUUGGGGCUUCAUCGAGAGCUUCCUCUUCCUGUAUCUGAAGGAAUUGGGGGCACCCAACUAUCUGCUUGGUGAGUUCUCGUCGUCAUUAGUGGUUA------- .........(((.(((..(((.(......(((((((((((..(((((........)))))(((((....)))))..........)).))))))))).).)))..))).))).------- ( -31.30, z-score = -0.24, R) >droWil1.scaffold_180708 769795 106 + 12563649 UUUGUCCUUGGCAAUUUCUGGGGUUUCAUUGAGAGUUUUCUGUUUCUCUAUCUCAAGGAGCUGGGUGCACCCAAUUAUUUGCUGGGUAAGU-----UAAAUUUGCGAAUUA-------- ......((..((((.......((((((.((((((................))))))))))))(((....)))......))))..)).....-----...............-------- ( -24.09, z-score = 0.11, R) >droVir3.scaffold_12963 7444534 116 + 20206255 UUUGUGCUCGGAAAUUUCUGGGGCUUUAUCGAGAGCUUUCUAUUUUUGUAUCUCAAGGAGCUGGGCGCUCCUAACUACUUGUUGGGUAAGUUCACGCAAUUCUGCCCUCAUUGCCA--- ..((.((.((((....))))((((......((((((...........)).)))).(((((((((((...((((((.....))))))...))))).))..)))))))).....))))--- ( -30.80, z-score = -0.37, R) >droMoj3.scaffold_6500 7306536 116 - 32352404 UUUGUGCUCGGAAAUUUCUGGGGCUUUAUCGAAAGCUUUCUAUUCUUGUAUCUCAAGGAGCUGGGCGCUCCCAAUUAUUUGUUAGGUAAGCGGCUCCAGCUGCUGUUCCAGCGCUA--- ...(((((.((((....((((((((.........((((....((((((.....))))))...))))(((((.(((.....))).))..)))))))))))......)))))))))..--- ( -37.60, z-score = -1.33, R) >droGri2.scaffold_15252 7103 113 - 17193109 UUUGUCCUCGGCAAUUUCUGGGGCUUUAUCGAGAGCUUUCUAUUCCUGUAUCUCAAGGAGCUCGGCGCUCCCAACUACUUGUUAGGUUUGUCUUUGUGACUUUGUCAAUGCGA------ .........(((((..((..(((((((...((((((...........)).))))..)))))))((((..((.(((.....))).))..)))).....))..))))).......------ ( -25.60, z-score = 0.53, R) >anoGam1.chr3R 4319833 90 + 53272125 UUCUUGUUGGGCAACUUUUGGGGCUUCAUCGAGAGCUUCCUAUUCCUGUACCUCAAGGAGCUUGGAGCUCCCAACUACUUGCUAGGUAAG----------------------------- ..(((((..(((((...(((((((((((.....((((.(((..............))))))))))))).)))))....)))))..)))))----------------------------- ( -26.24, z-score = -0.31, R) >triCas2.chrUn_68 39369 88 + 214078 UACAUUUUGGGCAACUUGUGGGGCUUUAUCGAGAGUUACCUCUUUUUCUACUUGAAGGACCUGGGGGCCCCGAAUUACCUGUUGGGCA------------------------------- ...((((.((((..((...((..(((((...((((..........))))...)))))..)).))..)))).))))..((....))...------------------------------- ( -22.90, z-score = 0.68, R) >consensus UUUGUGCUCGGCAACUUCUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUAUCUCAAGGAACUGGGAGCUCCCAACUACCUGCUGGGUAAGUU_U__CAGCCAUG_CC__UU________ ...((.(((((........(((((((......)))))))...(((((........)))))))))).)).......((((.....))))............................... (-13.90 = -12.22 + -1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:32 2011