| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,131,775 – 20,131,867 |
| Length | 92 |
| Max. P | 0.746993 |
| Location | 20,131,775 – 20,131,867 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 73.31 |
| Shannon entropy | 0.51529 |
| G+C content | 0.48643 |
| Mean single sequence MFE | -28.19 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.24 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20131775 92 - 23011544 UAAAAUGUGAAUGCGAAUGCGAAUGCUGGCGGCUUGUUGCCGGCAUUGGAAAUUUACGAGUGACACAAAUGUCCUUC--CUGCUGCAUUGCAGU ......((((((.......(.(((((((((((....))))))))))).)..))))))(((.((((....)))).)))--((((......)))). ( -30.60, z-score = -2.20, R) >droSim1.chr2L_random 792149 92 - 909653 UAAAAUGUGAAUGCGAAUGCGAAUGCUGGCGGCUUGUUGCCGGCAUUGGAAAUUUACGAGUGACACAAAUGUCCUUC--CUGCUGCAUUGCAGU ......((((((.......(.(((((((((((....))))))))))).)..))))))(((.((((....)))).)))--((((......)))). ( -30.60, z-score = -2.20, R) >droSec1.super_18 65841 92 - 1342155 UAAAAUGUGAAUGCGAAUGCGAAUGCUGGCGGCUUGUUGGCGGCAUUGGAAAUUUACGAGUGACACAAAUGUCCUUC--CUGCUGCAUUGCAGU ......((((((.(.(((((...(((..((.....))..)))))))).)..))))))(((.((((....)))).)))--((((......)))). ( -26.10, z-score = -0.53, R) >droAna3.scaffold_12916 7479694 93 + 16180835 UAAAACGAAAAUGCGAAUGCGAACGCUGGCGGCUUGUUGCCGGCAUUGGAAAUUUACGAGUGACACAAAUGGCCUUC-AUUGCUGCAUUGCAGU ...........(((.((((((...((((((((....))))))))...((..((((...........))))..))...-.....))))))))).. ( -23.90, z-score = 0.35, R) >droWil1.scaffold_180772 8800367 76 - 8906247 -----------------AAGAUACGAUGGCGGCUCGUUGCCGCCA-UGAAAAUUUACGAGUGACACAAAUGGUUUUCUUCAGCUGCAUUGCAGU -----------------........((((((((.....)))))))-)(((((((................)))))))....(((((...))))) ( -22.19, z-score = -1.34, R) >droYak2.chr2R 6594466 86 - 21139217 ------UAAAAUGUGAAUGCGAAUGCUGGCGGCUUGUUGCCGGCAUUGGAAAUUUACGAGUGACACAAAUGUCCUUC--CUGCUGCAAUGCAGU ------......((((((.(.(((((((((((....))))))))))).)..))))))(((.((((....)))).)))--((((......)))). ( -31.50, z-score = -3.33, R) >droEre2.scaffold_4845 18380564 92 + 22589142 UAAAAUGUGAAUGCGAAUGCGAAUGCUGGCGGCUUGUUGCCGGCAUUGGAAAUUUACGAGUGACACAAAUGUCCUUC--CUGCUGCAUUGCAGU ......((((((.......(.(((((((((((....))))))))))).)..))))))(((.((((....)))).)))--((((......)))). ( -30.60, z-score = -2.20, R) >droVir3.scaffold_12723 5759739 78 - 5802038 ------------GAAUAAGGAUGCGACGGCGGCUCGUUGCCGCCA-UGAGAAUUUACGAGUGACAGAAAUUG--UCUCUGUGCCGCA-UGCAGC ------------......(.(((((..((((((.....)))))).-........(((.((.(((((...)))--)).))))).))))-).)... ( -28.10, z-score = -2.08, R) >droMoj3.scaffold_6500 11378380 80 - 32352404 ------------GAAUAAGGAUGCGACGGCGGCUCGUUGCCGCCA-UCACAAUUUACGAGUGACAGAAAUUGUCUCUCUGUGCCGCA-UUCCGC ------------......(((((((..((((((.....)))))).-........((((((.(((((...))))).))).))).))))-)))... ( -31.70, z-score = -3.39, R) >droGri2.scaffold_15252 15430469 75 + 17193109 ---------------UAAGGAUGCGACGGCGGCUCGUUGCCGCCA-UGAAAAUUUACGAGUGACAGAAAUUG--UCUCUGUGCUGCA-UGCAGC ---------------...(.((((...((((((.....)))))).-............(((.(((((.....--..)))))))))))-).)... ( -26.60, z-score = -2.00, R) >consensus ______G__AAUGCGAAUGCGAACGCUGGCGGCUUGUUGCCGGCAUUGGAAAUUUACGAGUGACACAAAUGGCCUUC__CUGCUGCAUUGCAGU ........................((..(((((..(((((((....(....)....)).))))).(....)..........)))))...))... (-11.54 = -11.24 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:45 2011