| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,129,492 – 20,129,572 |
| Length | 80 |
| Max. P | 0.958244 |
| Location | 20,129,492 – 20,129,572 |
|---|---|
| Length | 80 |
| Sequences | 5 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 87.44 |
| Shannon entropy | 0.20290 |
| G+C content | 0.50763 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -18.88 |
| Energy contribution | -18.84 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20129492 80 + 23011544 UGAAAUGGACUGGAAGUCGGAAUGGAUAGGCGUGCUUGUGAGUGAGUGGAAGGACAUGUCUGCCUCGAUGAGUCUGAGUC .......(((((((.(((((...((.(((((((((((.............))).)))))))))))))))...))).)))) ( -21.42, z-score = -1.43, R) >droSim1.chr2L_random 789915 78 + 909653 UGAAAUGGACUGGAAGUCGGAAUGGAUAGGCGUGCUUGUG--UGAGUGGAAGGACAUGUCUGCCUCGAUGAGUCUGAGUC .......(((((((.(((((...((.(((((((((((...--........))).)))))))))))))))...))).)))) ( -21.60, z-score = -1.65, R) >droSec1.super_18 63601 78 + 1342155 UGAAAUGGACUGGAAGUCGGAAUGGAUAGGCGUGCUUGUG--UGAGUGGAAGGACAUGUCUGCCUCGAUGAGUCUGAGUC .......(((((((.(((((...((.(((((((((((...--........))).)))))))))))))))...))).)))) ( -21.60, z-score = -1.65, R) >droYak2.chr2R 6592288 70 + 21139217 UGAAAUGGACUGAAAACCGGAAUGGAUAGGCGUGCUUCUG----AAUGGAAGGACAUGUCUGCCUCGGUGAGUC------ .......((((....(((((...((.(((((((((((((.----...)))))..))))))))))))))).))))------ ( -22.60, z-score = -3.19, R) >droEre2.scaffold_4845 18378294 70 - 22589142 UGAAAUGGACUGAAAAUCGGAAUGGAUAGGCGUGCUCCUG----AAAGGAAGGACAUGUCUGCCUCGGUGAGUC------ .......((((....(((((...((.((((((((.((((.----......))))))))))))))))))).))))------ ( -21.90, z-score = -2.75, R) >consensus UGAAAUGGACUGGAAGUCGGAAUGGAUAGGCGUGCUUGUG__UGAGUGGAAGGACAUGUCUGCCUCGAUGAGUCUGAGUC ......(((((....(((((...((.(((((((((((.............))).))))))))))))))).)))))..... (-18.88 = -18.84 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:44 2011