| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,078,116 – 20,078,208 |
| Length | 92 |
| Max. P | 0.903970 |
| Location | 20,078,116 – 20,078,208 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.58 |
| Shannon entropy | 0.35225 |
| G+C content | 0.35804 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -15.53 |
| Energy contribution | -16.01 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20078116 92 - 23011544 CAAAAUUUUAAUCACUCAAUUGAUUGAGGUGC-GGGAGGUCUUUGAUUUGGUAGACC----UUAAUAAAAGGCUUUCCUAUCGAAAAUGAUAAGGAA ....((((((((((......))))))))))..-(((((((((((.(((.((....))----..))).)))))))))))((((......))))..... ( -23.60, z-score = -2.22, R) >droSim1.chr2L 19734239 92 - 22036055 CAAGACUUUAAUCACUCAAUUGAUUGAGGUGC-GGGAGGUCUUUGAUUUGGUAGACC----UUCAUAAAAGGCUUUUCUAUCGAAAAUGAUAAGGAA ....((((((((((......))))))))))..-(..((((((((.....((....))----......))))))))..)((((......))))..... ( -23.20, z-score = -1.68, R) >droSec1.super_7 3690741 92 - 3727775 CAAGACUUUAAUCACUCAAUUGAUUGAGGUGC-GGGAGGUCUUUGAUUUGGUAGACC----UUAAUAAAAGGCUUUUCUAUCGAAAAUGAUAAGGAA ....((((((((((......))))))))))..-(..((((((((.(((.((....))----..))).))))))))..)((((......))))..... ( -23.50, z-score = -2.16, R) >droYak2.chr2R 6542340 96 - 21139217 CAAGACUUUAAUCACUCAUUUGAUUGAGGUGC-GGGAGGUCUUUGAUUUGGUAUAAUAAAAUUAAUAAAAGGCUUUUCUAUCGAAAAUGAUAGCGAA ....((((((((((......))))))))))((-(..((((((((...(((((........)))))..))))))))..)((((......))))))... ( -24.80, z-score = -3.20, R) >droEre2.scaffold_4845 18336677 95 + 22589142 CAAGACUUUAAUCACUCAAUUGAUUGAGGUGC-GGGAGGUCUUUGAUUUGGUAUAAUAAAAUUAAUAAAAGGCUUUUCUAUCG-AAAUGAUAGGGAC ....((((((((((......))))))))))..-(..((((((((...(((((........)))))..))))))))..)((((.-....))))..... ( -22.20, z-score = -2.65, R) >droAna3.scaffold_12916 7447627 97 + 16180835 AGAGGCCUUAAUCACUCAAUUGCCUGGGACACGGGGAGGUCUUCGAUUCAACCUAAAUGCCAAGAUAAAAAGCUUAACAAUUGAGCUUGAUAAGAAA ......((((.(((((((((((((((.....)))).((((..........)))).......................))))))))..)))))))... ( -19.10, z-score = 0.31, R) >consensus CAAGACUUUAAUCACUCAAUUGAUUGAGGUGC_GGGAGGUCUUUGAUUUGGUAGAAC____UUAAUAAAAGGCUUUUCUAUCGAAAAUGAUAAGGAA ....((((((((((......))))))))))...(((((((((((.(((...............))).)))))))))))((((......))))..... (-15.53 = -16.01 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:43 2011