| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,044,677 – 20,044,767 |
| Length | 90 |
| Max. P | 0.639695 |
| Location | 20,044,677 – 20,044,767 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 70.49 |
| Shannon entropy | 0.53037 |
| G+C content | 0.39886 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -7.58 |
| Energy contribution | -8.34 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20044677 90 + 23011544 AAUUUGAAAACGUCUAGAAUCUGGGCAACAGUUUUACUCACUUGCCU-CAAAUUUUUGGACUGCCCUUAAAAUCCUUGGGGCAUGGUAAAC ...........((((((((..(((((((.((.....))...))))).-))...))))))))((((((..........))))))........ ( -23.30, z-score = -2.03, R) >droYak2.chr2R 6508236 88 + 21139217 AAUUUAAAAACGUCUAGAAUCAGAACAACAGUAU-ACUAACUCGAUU-CAGAUCUU-AGCCUGCCCUUAAAAUCCUUGGGGCAUGGUGAAC ...........((((.(((((.((.....((...-.))...))))))-)))))...-.(((((((((..........)))))).))).... ( -18.70, z-score = -1.64, R) >droSec1.super_7 3655540 89 + 3727775 AAUUUGAAAACGUCUAGAAUCUGACCAACAGUUUUACUAACUCGCCU-CAAAUUUU-AGCCUGCCCCUUAAAUCCUCGGGGCAUGGUAAAC (((((((....(((........)))....((((.....))))....)-))))))..-.(((((((((..........)))))).))).... ( -21.00, z-score = -2.63, R) >droSim1.chr2L 19699564 89 + 22036055 AAUUUGAAAACGUCUAGAAUCUGACCAACAGUUUUACUAACUCGCCU-CAAAUUUU-AGCCUGCCCCUUAAAUCCUCGGGGCAUGGUAAAC (((((((....(((........)))....((((.....))))....)-))))))..-.(((((((((..........)))))).))).... ( -21.00, z-score = -2.63, R) >droGri2.scaffold_15110 6112297 85 - 24565398 AUUCUCAGAGUUACAGCAAACAGCUAAACAGUUUUUGCCACACAAAUGCUAAUUGU--GCUUGGUACUCGUGACC--AGAAAAUUACAU-- .((((..(.((((((((.....)))..........((((((((((.......))))--)..)))))...))))))--))))........-- ( -15.70, z-score = -0.31, R) >consensus AAUUUGAAAACGUCUAGAAUCUGACCAACAGUUUUACUAACUCGCCU_CAAAUUUU_AGCCUGCCCCUAAAAUCCUCGGGGCAUGGUAAAC ..........................................................(((((((((..........)))))).))).... ( -7.58 = -8.34 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:39 2011