| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,032,093 – 20,032,158 |
| Length | 65 |
| Max. P | 0.888707 |
| Location | 20,032,093 – 20,032,158 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 91.10 |
| Shannon entropy | 0.14621 |
| G+C content | 0.58037 |
| Mean single sequence MFE | -25.16 |
| Consensus MFE | -22.53 |
| Energy contribution | -22.73 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20032093 65 - 23011544 AAUGGGCGUGCGAAGACCGCCCCCUUGUCGCUGUG------GCCGAAGGACUUCUAUCACGGCUGAAGAGA ...(((((.(......)))))).(((.((((((((------(..(((....)))..))))))).)).))). ( -22.30, z-score = -0.97, R) >droSim1.chr2L 19686847 65 - 22036055 AAUGGGCGUGUGAAGUCCGCCCCCUUUUCGCUGUG------GCCGAAGGACUUCUAUCACGGCUGAAGAGA ...(((((.(......)))))).((((((((((((------(..(((....)))..))))))).)))))). ( -25.90, z-score = -2.46, R) >droSec1.super_7 3637479 71 - 3727775 AAUGGGCGUGUGAAGACCGCCCCCUUUUCGCUGUGGACUUCGCCGAAGGACUUCUAUCACGGCUGAAGAGA ...(((((.((....))))))).(((((((((((((.((((...))))(....)..))))))).)))))). ( -25.20, z-score = -1.79, R) >droYak2.chr2R 6494908 65 - 21139217 AAUGGGCGUGUCAAGUCCGCCCCCUUUUCGCUGUG------GGCGAAGGACCUCAAUCACGGCUGAAGAGA ...(((((.(......)))))).((((((((((((------(..((......))..))))))).)))))). ( -25.20, z-score = -1.60, R) >droEre2.scaffold_4845 18289518 65 + 22589142 AAUGGGCGUGCGAAGUCCGCCCCCUUUUCGCUGUG------GGCGAAGGACUUCAAUCACGGCUGAAGAGA ...(((((..(...)..))))).((((((((((((------(..(((....)))..))))))).)))))). ( -27.20, z-score = -2.12, R) >consensus AAUGGGCGUGUGAAGUCCGCCCCCUUUUCGCUGUG______GCCGAAGGACUUCUAUCACGGCUGAAGAGA ...(((((.(......)))))).((((((((((((........(....)........)))))).)))))). (-22.53 = -22.73 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:36 2011