| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,020,573 – 20,020,666 |
| Length | 93 |
| Max. P | 0.934758 |
| Location | 20,020,573 – 20,020,666 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Shannon entropy | 0.37381 |
| G+C content | 0.49011 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20020573 93 - 23011544 UCAAAGCCCCUCCCCCCCACCGCCCCUUUUCCACAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUUAAAUGGGCGCCCAGAA ....................(((((.(((..(......((((((.((((((.....)))).)).))))))....)..))).)))))....... ( -19.80, z-score = -2.84, R) >droSim1.chr2L 19675952 86 - 22036055 UCAAAG---GCCCCC----CCGUCCUUUUGCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUUAAAUGGGCGCCCAGAA .....(---((.(((----......(((((........((((((.((((((.....)))).)).)))))))))))......))).)))..... ( -19.90, z-score = -1.50, R) >droSec1.super_7 3626613 89 - 3727775 UCAAAGCCCUCCCCC----UCGACCGUUUGCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUUAAAUGGGCGCCCAGAA .....((((......----......(((......))).((((((.((((((.....)))).)).))))))...........))))........ ( -18.40, z-score = -1.30, R) >droYak2.chr2R 6484169 78 - 21139217 ---------------UCAAGUCCCCCUUUUCUCCAACAAGUGCACUCGAGAAACAAUUUUAGAUUGCACUCAAAGCUAAAUGGGCGCUCAAAA ---------------...(((.(((.(((.........((((((.((.((((....)))).)).)))))).......))).))).)))..... ( -14.99, z-score = -1.35, R) >droEre2.scaffold_4845 18276558 87 + 22589142 ------CCAAGUCCCCCUUGCCCCCCUUUUCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGCUAAAUGGGCGCUCAGAA ------.............((.(((.(((.........((((((.((((((.....)))).)).)))))).......))).))).))...... ( -16.89, z-score = -1.08, R) >consensus UCAAAGCC__CCCCC_C__CCGCCCCUUUUCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUUAAAUGGGCGCCCAGAA ....................(((((.(((..(......((((((.((((((.....)))).)).))))))....)..))).)))))....... (-14.20 = -14.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:35 2011