| Sequence ID | dm3.chr2L |
|---|---|
| Location | 20,014,697 – 20,014,800 |
| Length | 103 |
| Max. P | 0.873791 |
| Location | 20,014,697 – 20,014,800 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 92.72 |
| Shannon entropy | 0.12812 |
| G+C content | 0.45825 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -28.22 |
| Energy contribution | -28.46 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 20014697 103 - 23011544 AAUCCCAAUCUAAAGCCAAUUGGAUGCCAUUUUUGAGUAUCCUUAGGCAGCUGGGACUUAAAGUUGAGUCUAACGAUAUGGUCCCGACCUUUUCGGGAGUUCC ..((((........(((....((((((((....)).))))))...)))...(((((((....((((....)))).....)))))))........))))..... ( -33.30, z-score = -2.58, R) >droEre2.scaffold_4845 18270654 103 + 22589142 AAUCCCAAUCUGAAGCCAAUUGCAUGCCAUUUUUGAGUGUCUUUAGACAGCUGGGACCUCAAGUUGAGUCUAACGAUAUGGCCCCGACCUUUUAGGGAGUCGU ..((((........((.....))..(((((.((((((.(((((.((....)))))))))))))....(((....))))))))............))))..... ( -25.50, z-score = -0.33, R) >droYak2.chr2R 6478448 103 - 21139217 AGUCCCAAUCUAAAGCCAAUUGCAUGCCAUUUUUGAGUAUCUUUAGGCAGCUGGGACUUUAAGUUGAGUCUAACGAUAUGGUCCCGACCUUUUCGGGAGUCCC (((((((..((...(((.(..(.((((((....)).)))))..).))))).))))))).........(((....)))..((((((((.....))))))..)). ( -27.50, z-score = -1.01, R) >droSec1.super_7 3620985 103 - 3727775 AAUCCCAAUCUAAAGCCAAUCGGAUGCCAUUUUUGAGUAUCCUUAGGCAGCUGGGACUUAAAGUUGAGUCUAACGAUAUGGUCCCGACCUUUUCGGGAGAUCC ..((((........(((....((((((((....)).))))))...)))...(((((((....((((....)))).....)))))))........))))..... ( -32.60, z-score = -2.24, R) >droSim1.chr2L 19670143 103 - 22036055 AAUCCCAAUCUAAAGCCAAUCGGAUGCCAUUUUUGAGUAUCCUUAGGCAGCUGGGACUUAAAGUUGGGUCUAACGAUAUGGUCCCGACCUUUUCGGGAGUUCC ..((((........(((....((((((((....)).))))))...)))...(((((((....((((....)))).....)))))))........))))..... ( -33.20, z-score = -1.94, R) >consensus AAUCCCAAUCUAAAGCCAAUUGGAUGCCAUUUUUGAGUAUCCUUAGGCAGCUGGGACUUAAAGUUGAGUCUAACGAUAUGGUCCCGACCUUUUCGGGAGUUCC ..((((........(((....((((((((....)).))))))...)))...(((((((....((((....)))).....)))))))........))))..... (-28.22 = -28.46 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:34 2011