| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,999,548 – 19,999,668 |
| Length | 120 |
| Max. P | 0.855722 |
| Location | 19,999,548 – 19,999,668 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.36 |
| Shannon entropy | 0.17114 |
| G+C content | 0.43768 |
| Mean single sequence MFE | -32.35 |
| Consensus MFE | -25.92 |
| Energy contribution | -27.80 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19999548 120 - 23011544 UUUUAAGUCCUGAAAAUCAAAUCGACUUGCUCGUGAGCCAUGCAUCUUUGUUCCAACUUAAGAAUGCUCUGCGCUUGGCAGAUUCUGAAGGACUCACUGAACCACAAAGGACUUUCAUUG ....(((((((.....(((....((.....))(((((((..(((((((.((....))..))).))))(((((.....))))).......)).)))))))).......)))))))...... ( -29.10, z-score = -1.25, R) >droSim1.chr2L 19660048 118 - 22036055 UUUUAAGUCCUGAAAAUCGAGUCGACUUGUUC--GAGCCAUGCAUCCUUGUUCCAACUUAAGGAUGCUCUGCGCUUGGCAGAUUCUGAUGGACUCACUGAACCACAAAGGACUUUCAUUC ....((((((((((...((((....)))))))--((((((((((((((((........)))))))))(((((.....))))).....)))).)))............)))))))...... ( -38.90, z-score = -3.62, R) >droSec1.super_7 3610913 118 - 3727775 UUUUAAGUCCUGAAAAUCGAGUCGACUUGUUC--GAGCCAUGCAUCCUUGUUCCAACUUAAGGAUGCUAUGCGCUUGGCAGAUUCUUAUGGACUCACUGAACCACAAAGGACUUCCAUUC ....((((((((.....)(((((...((((.(--((((((((((((((((........))))))))).))).)))))))))...(....))))))............)))))))...... ( -37.20, z-score = -3.66, R) >droEre2.scaffold_4845 18260801 117 + 22589142 UUUUAAACCCUUAAAAUGGAGUGGACUUGUUC--AAGCCAUGUAUCUUUGUUCCAACUUAAGAAUGCUCUGCGCCUGGCAGACUCUGAUGGACUCACUGAACCACAAAGGACUCUCUUC- .................((((.(..(((((((--((((((((((((((.((....))..))).))))(((((.....))))).....)))).))...)))))....)))..).))))..- ( -24.20, z-score = 0.03, R) >consensus UUUUAAGUCCUGAAAAUCGAGUCGACUUGUUC__GAGCCAUGCAUCCUUGUUCCAACUUAAGAAUGCUCUGCGCUUGGCAGAUUCUGAUGGACUCACUGAACCACAAAGGACUUUCAUUC ....(((((((.......(((....)))((((..((((((((((((((((........)))))))))(((((.....))))).....)))).)))...)))).....)))))))...... (-25.92 = -27.80 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:34 2011