| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,991,668 – 19,991,721 |
| Length | 53 |
| Max. P | 0.537230 |
| Location | 19,991,668 – 19,991,721 |
|---|---|
| Length | 53 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 73.19 |
| Shannon entropy | 0.43341 |
| G+C content | 0.30479 |
| Mean single sequence MFE | -9.32 |
| Consensus MFE | -4.06 |
| Energy contribution | -3.24 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19991668 53 - 23011544 UACUAAAAGUCGAGUGCCGAAUAUGAAACUUUUAUUUAUUUGUGUAUUUUCCG ........(..((((((((((((.............)))))).))))))..). ( -7.62, z-score = -1.40, R) >droSim1.chr2L 19652219 52 - 22036055 -ACUAAAAGCCGAGUGCCGAAUAUGAAACUUUUAUUUAUUUGUGUAUUUUCUG -..........((((((((((((.............)))))).)))))).... ( -6.52, z-score = -1.17, R) >droSec1.super_7 3603022 52 - 3727775 -ACUAAAAGUCGAGUGCCGAAUAUGAAACUUUUAUUUAUUUGUGUAUUUUCCG -.......(..((((((((((((.............)))))).))))))..). ( -7.62, z-score = -1.44, R) >droVir3.scaffold_12963 18994840 53 + 20206255 UGCAGACAAGCGAGAGGUAAAGGAAACUUUUUACUUUUGUUUUGUUUUUUUUA ...(((((((((((((..((((....))))...)))))).)))))))...... ( -15.50, z-score = -3.63, R) >consensus _ACUAAAAGUCGAGUGCCGAAUAUGAAACUUUUAUUUAUUUGUGUAUUUUCCG ........(..((((((((((((.............)))))).))))))..). ( -4.06 = -3.24 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:30 2011