| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,982,044 – 19,982,148 |
| Length | 104 |
| Max. P | 0.581881 |
| Location | 19,982,044 – 19,982,148 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.58 |
| Shannon entropy | 0.36387 |
| G+C content | 0.42063 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19982044 104 - 23011544 UCCUUUGUGGCUUCCCGCAAAGAUUAAGCUAUGUCUUUGUCAUAAUACGACAGAUGGAAACUAAACAAUGCAAUU---------UUCGACAAGGGCAUUGUUUUCCUGUGCAC ..((((((((....)))))))).....((......((((((.......)))))).(((((....(((((((..((---------......))..))))))))))))...)).. ( -27.70, z-score = -2.23, R) >droEre2.scaffold_4845 18243786 112 + 22589142 UCCCUUGUGGCUUGUCCCAAAGAUUGAGCAAUGUCCCUGUCAUAAUACGACAAAUGGAAACUAAGCAAUGCAAUUGCCUCAUUGCUU-CCUACCGAAAGCUUCAGAUGUGCAU ....(((.(((((.((....((...(((((((((((.((((.......))))...)))......(((((...)))))..))))))))-.))...))))))).)))........ ( -21.80, z-score = -0.07, R) >droYak2.chr2R 6451572 111 - 21139217 UCCUUUGUGGCUUGUCGCAAAGAUUGAGUAAUGUCCAUGUCAUAAUACGACAUAUAGAAACUAAGCAAUGACAUUG--UCAUUGUUUGACUAUCAACCGCUUGGGAUGUGCAC ..((((((((....)))))))).....(((.((((((((((.......)))))........(((((((((((...)--))))))))))...............)))))))).. ( -30.00, z-score = -1.80, R) >droSec1.super_7 3593497 104 - 3727775 UCCUUUGUGGCUUCCCGCAAAGACUGAGCAAUGUCUCUGUCAUAAUACGACAGAUGGAAACUAAGCAAUGCAAUU---------UUCGACAAGGGCAUUGUUUCCCUGUGCAU ..((((((((....)))))))).....(((.....((((((.......)))))).((((.....(((((((..((---------......))..)))))))))))...))).. ( -30.30, z-score = -2.06, R) >droSim1.chr2L 19642675 104 - 22036055 UGCUUUGUGGCUUCCCACAAAGAUUGAGCAAUGUCUCUGUCAUAAUACGACAGAUGGAAACUAAACAAUGCAAUU---------UUCGACAAGGGCAUUGUUUCCCUGUGCAC ..((((((((....)))))))).....(((.....((((((.......)))))).((((.....(((((((..((---------......))..)))))))))))...))).. ( -30.30, z-score = -2.45, R) >consensus UCCUUUGUGGCUUCCCGCAAAGAUUGAGCAAUGUCUCUGUCAUAAUACGACAGAUGGAAACUAAGCAAUGCAAUU_________UUCGACAAGGGCAUUGUUUCCCUGUGCAC ..((((((((....)))))))).....(((.(((.((((((.......)))))).(....)...))).)))....................((((........))))...... (-16.20 = -16.52 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:27 2011