| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,979,726 – 19,979,822 |
| Length | 96 |
| Max. P | 0.850312 |
| Location | 19,979,726 – 19,979,822 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 76.72 |
| Shannon entropy | 0.43364 |
| G+C content | 0.39143 |
| Mean single sequence MFE | -24.42 |
| Consensus MFE | -14.88 |
| Energy contribution | -14.47 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19979726 96 - 23011544 UGAGUCGAACUGUAA---GAGGUCCAAACUAAUAGCAGUUGGCUUUAAUGAGCUGUCAAAUAUGACGGCGGUU--ACGAAAUCUGAAUUAGACUUUGGUGA .(((((.((((((.(---..(((....)))..).)))))))))))......(((((((....)))))))..((--((.(((((((...)))).))).)))) ( -24.80, z-score = -1.63, R) >droSim1.chr2L 19640313 96 - 22036055 UGAGGCGAACUGUAA---GAGGUCCAAGCUAAUAGCAGUUGGCUUUAAUGAGCUGUCAAAUAUGACGGCGGUU--ACGAAAUCUGAAUUAGACUUUGGUGA ((((((.((((((.(---..(((....)))..).)))))).))))))....(((((((....)))))))..((--((.(((((((...)))).))).)))) ( -29.30, z-score = -2.72, R) >droSec1.super_7 3591152 96 - 3727775 UGAGGCAAACUGUAA---GAGGUCCAAGCUAAUAGCAGUUGGCUUUAAUGAGCUGUCAAAUAUGACGGCGGUU--ACGAAAUCUGAAUUAGACUUUGGUGA ((((((.((((((.(---..(((....)))..).)))))).))))))....(((((((....)))))))..((--((.(((((((...)))).))).)))) ( -27.20, z-score = -2.10, R) >droYak2.chr2R 6449219 96 - 21139217 UGAGUCGAAUUGUAA---GAGGUCCAAACUAAUAGCAGUUGCCUUUAAUGAGCUGUCAAAUAUGACGGCGGUU--UCGAAAUUUAAAUUAGACUUUUGUGA .(((((...(..(.(---(((((...((((......)))))))))).)..)(((((((....)))))))....--...............)))))...... ( -22.40, z-score = -1.43, R) >droEre2.scaffold_4845 18241426 96 + 22589142 UGAGGCGAACUGUAA---GAGGUCCGAACUAAUAGCAGUUGGCUUUAAUGAGCUGUCAAAUAUGACGGCGGUU--ACGAAAUUUGAAUUAGACUUUGGUGG ((((((.((((((.(---..(((....)))..).)))))).))))))....(((((((....)))))))...(--((.(((.((......)).))).))). ( -26.90, z-score = -2.42, R) >droVir3.scaffold_12963 18975781 101 + 20206255 GAAGGCACGAUGUGAUCGAAUGAUACAACAUAUGGUAUUUUUCUGCAAUUUGUUGUUGUUUUUGGUAUUUAUUAAAUAAUGUUUGAGUAGAAAAGCUAUGG ...(((((.((((((((....)))....))))).))..((((((((.(..(((((((.................)))))))..)..))))))))))).... ( -15.93, z-score = 0.61, R) >consensus UGAGGCGAACUGUAA___GAGGUCCAAACUAAUAGCAGUUGGCUUUAAUGAGCUGUCAAAUAUGACGGCGGUU__ACGAAAUCUGAAUUAGACUUUGGUGA ((((((.((((((.......(((....)))....)))))).))))))....(((((((....))))))).......((((.(((.....))).)))).... (-14.88 = -14.47 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:26 2011