| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,940,072 – 19,940,167 |
| Length | 95 |
| Max. P | 0.725559 |
| Location | 19,940,072 – 19,940,167 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 73.79 |
| Shannon entropy | 0.46901 |
| G+C content | 0.53774 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -14.84 |
| Energy contribution | -13.95 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.725559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19940072 95 - 23011544 AAUUCCAGAUACUACAGCCCCCCAUUGUAGUUGUAGCUGUUCGUUCGUCAAGUGGACGGCCAGCCGACGCUGCGAACUGGGAGAGUAAGAGUUGU (((((....((((....(((....(((((((.((.((((..((((((.....))))))..))))..)))))))))...)))..)))).))))).. ( -29.70, z-score = -1.54, R) >droSim1.chr2L 19602779 92 - 22036055 AAUUCCAGAUACUACAG-CCCCCAUUGUAGUUGUAGUUGUCCGUCCGCCAAGUGGACGAACAGCCGUCGCUGCGAACUGGGAGG--AAGAGUUGC ..........(((....-(((((((((((((.(..(((((.(((((((...))))))).)))))..).)))))))..)))).))--...)))... ( -35.00, z-score = -3.71, R) >droSec1.super_7 3544509 92 - 3727775 AAUUCCAGAUACUACAG-CCCCCAUUGUAGUUGUAGUUGUCCGUCCGCCAAGUGGACGGCCAGCCGCCGCUGCGAACUGGGAGG--AAGAGUUGC ..........(((....-(((((((((((((.(..((((.((((((((...)))))))).))))..).)))))))..)))).))--...)))... ( -38.80, z-score = -4.17, R) >droYak2.chr2R 6409653 80 - 21139217 AAUUCCAGAUACUACAG--CCCCAUUGUAGUU----------GUCCGUCAAGUGGAUGGCCAUCCGGCGCUGCGAACUGGGAA---AAGAGUUGC ..((((((......(((--(((...((..((.----------.((((.....))))..))))...)).))))....)))))).---......... ( -22.00, z-score = -0.42, R) >droEre2.scaffold_4845 18202358 81 + 22589142 AAUUCCAGAUACUAUAG--CCCCAUUGUAGUU----------GUCCGUCAAGUGGAUGGCCGUCCGCCGCUGCGAGCUGGGAAG--ACGAGUUGC ..((((((..(((((((--.....))))))).----------...(((..(((((.(((....)))))))))))..))))))..--......... ( -20.60, z-score = 0.41, R) >droAna3.scaffold_12916 7304901 76 + 16180835 AAUUUGAGUUACU-------CUUAUUGUGGCA----------GUCCGUCAAGUGGAUGGCUGGACACAGAUGUGAAUGGAGGGG--CCCUACUGC .......((..((-------((..(((((.((----------(.(((((.....))))))))..)))))........))))..)--)........ ( -19.10, z-score = 0.40, R) >consensus AAUUCCAGAUACUACAG__CCCCAUUGUAGUU__________GUCCGUCAAGUGGACGGCCAGCCGCCGCUGCGAACUGGGAGG__AAGAGUUGC ....................(((((((((((...........(((((.....)))))...........)))))))..)))).............. (-14.84 = -13.95 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:23 2011