| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,937,895 – 19,937,950 |
| Length | 55 |
| Max. P | 0.610051 |
| Location | 19,937,895 – 19,937,950 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 90.48 |
| Shannon entropy | 0.16250 |
| G+C content | 0.53626 |
| Mean single sequence MFE | -14.62 |
| Consensus MFE | -12.12 |
| Energy contribution | -13.16 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19937895 55 + 23011544 UGUCUCCAUCUGGCAGUAUACGUAUGUCGCCCUGUCGGGUGAUUUGCAUUUCCCC ((((.......))))......(((.(((((((....))))))).)))........ ( -16.40, z-score = -2.24, R) >droSim1.chr2L 19600558 55 + 22036055 UGUCUCCAUCUGGCAGUAUACGUAUGUCGCCCUGUCGGGUGAUUUGCAUUUCCCC ((((.......))))......(((.(((((((....))))))).)))........ ( -16.40, z-score = -2.24, R) >droSec1.super_7 3542304 55 + 3727775 UGUCUCCAUCUGGCAGUAUACGUAUGUUGCCCUGUCGGGUGAUUUGCAUUUCCCC ((((.......))))......(((.((..(((....)))..)).)))........ ( -14.00, z-score = -1.30, R) >droYak2.chr2R 6407502 51 + 21139217 UGUCCCCAGCUGGCAGUAUA----UGUCGCCCUGUCGGGUGAUUUGCAUUUCCCC ((((.......))))(((..----.(((((((....))))))).)))........ ( -14.10, z-score = -1.29, R) >droEre2.scaffold_4845 18200220 51 - 22589142 UGUCUCCAUCUGGCACCUUA----UGUCGCCCAGUCGGGUGAUUUGCAUUUCCCC ((((.......)))).....----.(((((((....)))))))............ ( -12.20, z-score = -1.02, R) >consensus UGUCUCCAUCUGGCAGUAUACGUAUGUCGCCCUGUCGGGUGAUUUGCAUUUCCCC ((((.......))))......(((.(((((((....))))))).)))........ (-12.12 = -13.16 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:22 2011