| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,931,848 – 19,931,948 |
| Length | 100 |
| Max. P | 0.963951 |
| Location | 19,931,848 – 19,931,948 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 95.11 |
| Shannon entropy | 0.09074 |
| G+C content | 0.43026 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -23.16 |
| Energy contribution | -23.68 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19931848 100 - 23011544 GUCGAAGCCUCCACAACGGGCGUCUGUCAAU-AAAAAAUACUCGUAAUAC-AAAAAGCCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUU ((((..((((.......))))((((((((..-..................-.....(((...))).........((((.....))))))))))))))))... ( -27.10, z-score = -2.60, R) >droSim1.chr2L 19594691 100 - 22036055 GUCGAAGCCUCCACAACGGGCGUCUGUCAAU-AAAAAAUACUCGUAAUAC-AAAAAGCCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUU ((((..((((.......))))((((((((..-..................-.....(((...))).........((((.....))))))))))))))))... ( -27.10, z-score = -2.60, R) >droSec1.super_7 3536490 100 - 3727775 GUCGAAGCCUCCACAACGGGCGUCUGUCAAU-AAAAAAUACUCGUAAUAC-AAAAAGCCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUU ((((..((((.......))))((((((((..-..................-.....(((...))).........((((.....))))))))))))))))... ( -27.10, z-score = -2.60, R) >droYak2.chr2R 6401498 100 - 21139217 GUCGAAGCCUCCACAACGGGCAUCUGUCAAU-AAAAAAUACUCGUAAUACAAAAAAGCCAAUGGCAAAUAAUAUGC-GCCAAACUGCUGACAGACUGGCAUU ((((..((((.......)))).((((((...-...........(.....).....(((...((((...........-))))....))))))))).))))... ( -21.00, z-score = -1.50, R) >droEre2.scaffold_4845 18194132 101 + 22589142 GUCGAAGCCUCCACAACGGGCAUCUGUCAAU-AAAAAAUACUCGUAAUACAAAAAAGCCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUU ((((..((((.......)))).(((((((..-........................(((...))).........((((.....))))))))))).))))... ( -23.70, z-score = -1.88, R) >droAna3.scaffold_12916 7297192 101 + 16180835 GUUGAAGCCUCCACAACUGGCGUCUGUCAAUAAAAAAAUACUCGUAAUAA-AAAGAGCCAAUAGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCACG ......(((.(((....))).((((((((...........(((.......-...))).................((((.....)))))))))))).)))... ( -23.20, z-score = -2.09, R) >consensus GUCGAAGCCUCCACAACGGGCGUCUGUCAAU_AAAAAAUACUCGUAAUAC_AAAAAGCCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUU ((((..((((.......))))((((((((...........................((.....)).........((((.....))))))))))))))))... (-23.16 = -23.68 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:21 2011