| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,913,115 – 19,913,235 |
| Length | 120 |
| Max. P | 0.832643 |
| Location | 19,913,115 – 19,913,235 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.00 |
| Shannon entropy | 0.19631 |
| G+C content | 0.46167 |
| Mean single sequence MFE | -34.35 |
| Consensus MFE | -29.04 |
| Energy contribution | -29.60 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19913115 120 + 23011544 CCCUGGGCAGAUACUCCGUCAACUUGCUGGUUUCGUUGUGCCUUAUAUUGCCUCAUAGCAUUAUUGAUACUAAUCCUUUCCUGAGGUGUCAAUCGUAGGCGACUGGAGUAUUUCUCGUAG ....(((.((((((((((((((((....)))).......((((.....(((......)))..(((((((((.............)))))))))...))))))).)))))))))))).... ( -32.92, z-score = -1.50, R) >droEre2.scaffold_4845 18176061 120 - 22589142 CCCUGAGCAGAUACUCCGUCAACUUGGUGGUUUUGCUGUGCACGAUACUGCUUAAUAGCAUUAUUGAUGUUAUUCUUUUUCUGAGCUGUCAGAUGUAGGCGACUGGAGUAUUUCUCGUAA ....(((.((((((((((((((((....))))..(((.(((((((((.((((....)))).))))).............(((((....))))))))))))))).)))))))))))).... ( -37.00, z-score = -2.47, R) >droYak2.chr2R 6381535 120 + 21139217 CCCUGUGCAGAUACUCCGUCAACUUUCUGGUUUUGUUGUGCCCGAUACUGCCUUAUAGCAUUAUCGAUACCCUUCUUCUCCUGAGCUGUCAGUCGUAGGCGGCUGGAGUAUUUCUCGUAA ....(.(.((((((((((((........(((........))).((((.(((......))).)))))))...............(((((((.......))))))))))))))))).).... ( -30.90, z-score = -1.20, R) >droSec1.super_7 3518159 120 + 3727775 CCCUGGGCAGAUACUCCGUCAACUUGCUGGUUUCGUUGUGCCUUAUACUGCCUGAUAGCAUUAUUGAUACUAUUCCUUUCCUGAGGUGUCAGUCGAAGGCGACUGGAGUAUUUCUCGUAA ....(((.((((((((((((((((....)))).......(((((....(((......)))..(((((((((.............)))))))))..)))))))).)))))))))))).... ( -34.52, z-score = -1.44, R) >droSim1.chr2L 19575977 120 + 22036055 CCCUGGGCAGAUACUCCGUCAACUUGCUGGUUUCGUUGUGCCUUAUACUGCCUCAUAGCAUUAUUGACACUAUUCCUUUCCUGAGGUGUCAGUCGAAGGCGACUGGAGUAUUUCUCGUAA ....(((.((((((((((((((((....)))).......(((((....(((......)))..(((((((((.............)))))))))..)))))))).)))))))))))).... ( -36.42, z-score = -2.06, R) >consensus CCCUGGGCAGAUACUCCGUCAACUUGCUGGUUUCGUUGUGCCUUAUACUGCCUCAUAGCAUUAUUGAUACUAUUCCUUUCCUGAGGUGUCAGUCGUAGGCGACUGGAGUAUUUCUCGUAA ....(((.((((((((((((((((....)))).......(((((....(((......)))..(((((((((..((.......)))))))))))..)))))))).)))))))))))).... (-29.04 = -29.60 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:18 2011