| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,853,060 – 19,853,166 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 19,853,060 – 19,853,166 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 88.01 |
| Shannon entropy | 0.20317 |
| G+C content | 0.36777 |
| Mean single sequence MFE | -25.34 |
| Consensus MFE | -20.30 |
| Energy contribution | -21.06 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 19853060 106 - 23011544 UCAAGUCCAGUGGCAUUUGCUACUCGUAUGCAGCUUUUCAAUUUCGAUUGUAGCAUUUUAAAUAAAUAGGCAAUUCAAGUGUUUUAUGACACUGAAAUGGACGGCA------- ....((((((((((....))))).....(((.(((...((((....)))).)))((((.....))))..))).((((.(((((....))))))))).)))))....------- ( -27.30, z-score = -1.98, R) >droEre2.scaffold_4845 18117867 113 + 22589142 CCAAGUCUAGUGCCAUUUACUUCUCGUAUGCAGCUUUUCAAUUUCGCUCGUUCAAUUUUAAAUAAAUAGGCAAUUCAAGUGUUUUAUGACACUGAAAUGGACGACAGAGCUCU ....(((((.(((((((((..........(((((...........))).))...........))))).)))).((((.(((((....))))))))).)))))........... ( -21.30, z-score = -0.33, R) >droYak2.chr2R 6322600 113 - 21139217 CCUUGUCUAGUGCCAUUUACUUCUCAUAUGCAGCCUUUCAAAUUCGAUUACACAAUUUUAAAUAAAUAGGCAAUUCAAGUGUUUUAUGACACUGAAAUGGACGGCAAAGCUCU ..(((((..((.((((((..............((((.........((((....))))..........))))......((((((....)))))).)))))))))))))...... ( -19.61, z-score = -0.31, R) >droSec1.super_7 3458464 106 - 3727775 CCAAGUCCAGUGCCAUUUGCUGUUCAUAUGCAGCUUUUCAAUUUCGAUUGUAGCAUUUUAAAUAAAUAGGCAAUUCAAGUGUUUUAUGACACUGAAAUGGACGGCA------- ....(((((.((((....(((((......)))))....((((....))))..................)))).((((.(((((....))))))))).)))))....------- ( -28.20, z-score = -2.19, R) >droSim1.chr2L 19513105 106 - 22036055 CCAAGUCCAGUGCCAUUUGCUGCUCAUAUGCAGCUUUUCAAUUUCGAUUGUAGCAUUUUAAAUAAAUAGGCAAUUCAAGUGUUUUAUGACACUGAAAUGGACGGCA------- ....(((((.((((....(((((......)))))....((((....))))..................)))).((((.(((((....))))))))).)))))....------- ( -30.30, z-score = -2.64, R) >consensus CCAAGUCCAGUGCCAUUUGCUGCUCAUAUGCAGCUUUUCAAUUUCGAUUGUAGCAUUUUAAAUAAAUAGGCAAUUCAAGUGUUUUAUGACACUGAAAUGGACGGCA_______ ....(((((.(((((((((........((((.((...((......))..)).))))......))))).)))).((((.(((((....))))))))).)))))........... (-20.30 = -21.06 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:14 2011