| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,841,941 – 1,842,046 |
| Length | 105 |
| Max. P | 0.781112 |
| Location | 1,841,941 – 1,842,046 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.92 |
| Shannon entropy | 0.17589 |
| G+C content | 0.52143 |
| Mean single sequence MFE | -35.20 |
| Consensus MFE | -29.82 |
| Energy contribution | -30.77 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1841941 105 + 23011544 AAUUCAUGGGGCGACUCUGCGUCUUCAGCUGCGUUGACAAACUGCAGAGAUAAGCGUGCGAAAGGGAGGACGUGGAGCCAGUACAGAGCCAGUCAUGAAUGUAUG .(((((((.(((..(((..(((((((..(((((((....))).))))...........(....).)))))))..))).(......).)))...)))))))..... ( -36.60, z-score = -1.82, R) >droSim1.chr2L 1829033 105 + 22036055 AAUUCAUGGGGCGACUCUGCGUCUUCAGCUGCGUUGACAAACUGCAGAGAUAAGCGUGCGAAAGGGAGGACGUGGAGCCAGUACAGAGCCAGUCAUGAAUGUAUG .(((((((.(((..(((..(((((((..(((((((....))).))))...........(....).)))))))..))).(......).)))...)))))))..... ( -36.60, z-score = -1.82, R) >droSec1.super_14 1788662 105 + 2068291 AAUUCAUGGGGCGACUCUGCGUCUUCAGCUGCGUUGACAAACUGCAGAGAUAAGCGUGCGAAAGGGAGGACGUGGAGCCAGUACAGAGCCAGUCAUGAAUGUAUG .(((((((.(((..(((..(((((((..(((((((....))).))))...........(....).)))))))..))).(......).)))...)))))))..... ( -36.60, z-score = -1.82, R) >droYak2.chr2L 1815527 105 + 22324452 AAUUCAUGGGGCGACUCUGCGUCUUCAGCUGCGUUGACAAACUGCAGAGAUAAGCGUGCGAAAGGGAGGACGUGGAGCCAGUACAGAGCCAGCCAUGAAUGUAUG .(((((((((((..(((..(((((((..(((((((....))).))))...........(....).)))))))..))).(......).)))..))))))))..... ( -38.70, z-score = -2.32, R) >droEre2.scaffold_4929 1888927 105 + 26641161 AAUUCAUGAGGCGACUCUGCGUCUUCAGCUGCGUUGACAAACUGCAGAGAUAAGCGUGCGAAAGGGCGGACGUGGAGCCAGUACAGAGCCAGUCAUGAAUGUAUG .(((((((((((..(((..((((.....(((((((....))).)))).......(((.(....).)))))))..))).(......).)))..))))))))..... ( -37.60, z-score = -1.94, R) >droAna3.scaffold_12916 434640 90 - 16180835 AAUUCAUGGGGCGACGCUGCGUCUUCACUUGCCUUGACAAACUGCAGAGAUAAG--------AUGGCCCAAGUACAGC-------GAGCCAGUCAUGAAUGUAUG .(((((((.(((..(((((((((((..(((((...........))).))..)))--------)))((....)).))))-------).)))...)))))))..... ( -25.10, z-score = -0.53, R) >consensus AAUUCAUGGGGCGACUCUGCGUCUUCAGCUGCGUUGACAAACUGCAGAGAUAAGCGUGCGAAAGGGAGGACGUGGAGCCAGUACAGAGCCAGUCAUGAAUGUAUG .(((((((((((..((((((((((((..(((((((....))).))))...........(....).))))))))))))..........)))..))))))))..... (-29.82 = -30.77 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:27 2011