| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,851,490 – 19,851,580 |
| Length | 90 |
| Max. P | 0.609818 |
| Location | 19,851,490 – 19,851,580 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 77.63 |
| Shannon entropy | 0.38962 |
| G+C content | 0.55651 |
| Mean single sequence MFE | -30.74 |
| Consensus MFE | -19.66 |
| Energy contribution | -21.42 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19851490 90 - 23011544 GCAUGGCCAUUCGGGCAAUUGGGCACAGAUGCGAGUUGAAAUGCCCGAUGCCAGUGUGAGUGGCACGUGGACUGCGUAUCCGAGUGGACA .((((((((((((((((.(((((((..(((....)))....)))))))))))....)))))))).))))..(..(........)..)... ( -34.50, z-score = -1.20, R) >droSec1.super_7 3456861 89 - 3727775 GCAUGGCCAUUCGGGCAAUUGGGCACAGAUGCGAGUUGAAAUGCCCGGUGCCAGUGUGAGUGACACGUGGGUUGGGU-UCCGAGUGGACA ...((.(((((((((((.(((....))).)))..........((((..(.(((((((.....)))).))))..))))-.)))))))).)) ( -32.30, z-score = -0.56, R) >droYak2.chr2R 6320993 83 - 21139217 ------GCAUUCGGGCAAUUGAGCACAGAUGCGAGUUGAAAUGCCCGGUCCCAGUGUGAGUGACACGUGGGCUGGGU-UCUGAGUGGACA ------.(((((((((((((..(((....))).)))))....((((((.((((((((.....)))).))))))))))-)))))))).... ( -33.90, z-score = -2.34, R) >droEre2.scaffold_4845 18116289 83 + 22589142 ------ACAUUCGGGCAAUUGGGCCCAGAUGCGAGUCGAAGUGCCCUUUUCCAGUGUGAGUGACACGUGGACUGGGU-UCUGAGUGGACA ------.(((((((((......)))).(((....)))..((.((((...((((((((.....)))).))))..))))-.))))))).... ( -29.90, z-score = -1.01, R) >droAna3.scaffold_12916 7220812 72 + 16180835 ------CUAUACGGGCAAUUGGGCACAGAUGUGUGUUGUUUGGCCCGA-ACGAGUGUGAGUGACACGUGAGU---GU-UUUGA------- ------.....(((((.....((((((....)))))).....))))).-............(((((....))---))-)....------- ( -23.10, z-score = -1.91, R) >consensus ______CCAUUCGGGCAAUUGGGCACAGAUGCGAGUUGAAAUGCCCGAUGCCAGUGUGAGUGACACGUGGGCUGGGU_UCUGAGUGGACA .......((((((((((.(((....))).)))..........(((((((.(((((((.....)))).))))))))))..))))))).... (-19.66 = -21.42 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:13 2011