| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,844,332 – 19,844,395 |
| Length | 63 |
| Max. P | 0.983887 |
| Location | 19,844,332 – 19,844,395 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 73.01 |
| Shannon entropy | 0.47751 |
| G+C content | 0.43281 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -9.39 |
| Energy contribution | -8.76 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.983887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19844332 63 + 23011544 AUUUGUUGCCAUCCCUCGUCAGAAAGUGAAAACGA-CCGAGAUCCACUUGAGGUAGCAAAUAAC--------------- ((((((((((...............((....))..-.((((.....)))).))))))))))...--------------- ( -15.50, z-score = -2.62, R) >droAna3.scaffold_12916 7213903 63 - 16180835 AUUUGUAGCUUUGGCCUGUCAGGCACUGAAACCGA-CAAGGAUCUCUUUAAGGUGGCGAAUAAC--------------- ((((((.(((((((((.....))).......((..-...)).......)))))).))))))...--------------- ( -14.70, z-score = -0.48, R) >droEre2.scaffold_4845 18109121 63 - 22589142 AUUUGUUGCCAUCCCUCGUCAGAAAGUGAAAACGA-CAAGGAUCCACUUGAGGUAGCAAAUAAC--------------- ((((((((((...............((....))..-((((......)))).))))))))))...--------------- ( -17.50, z-score = -3.01, R) >droYak2.chr2R 6313790 63 + 21139217 AUUUGUUGCUAUCCCUCGUCAGAAAGUGAAAUCGA-CAAGGAUCCACUCGAGGUAGCAAAUAAC--------------- .....((((((..(((((......((((..(((..-....))).))))))))))))))).....--------------- ( -15.30, z-score = -2.03, R) >droSec1.super_7 3449705 63 + 3727775 AUUUGUUGCCAUCCCUCGUCAGAAAGUGAAAACGA-CAGGGAUCCACUUGAGGUAGCAAAUAAC--------------- ((((((((((((((((.(((.....((....))))-)))))))........))))))))))...--------------- ( -20.50, z-score = -3.56, R) >droSim1.chr2L 19503895 63 + 22036055 AUUUGUUGCCAUCCCUCGUCAGAAAGUGAAAACGA-CAAGGAUCCACUUGAGGUAGCAAAUAAC--------------- ((((((((((...............((....))..-((((......)))).))))))))))...--------------- ( -17.50, z-score = -3.01, R) >droGri2.scaffold_15126 7084101 76 + 8399593 AUUUGUUGUCAG---UCGUCUUAAAGUGUCUACGAGUUUAGAUUUAGUCCAGGCAAUCAGUUGGCUGUCUGCAUUUAAC ...(((.(.(((---(((.((.....(((((..((.(........).)).)))))...)).)))))).).)))...... ( -14.70, z-score = -0.74, R) >consensus AUUUGUUGCCAUCCCUCGUCAGAAAGUGAAAACGA_CAAGGAUCCACUUGAGGUAGCAAAUAAC_______________ ((((((((((.......(((......((....))......)))........)))))))))).................. ( -9.39 = -8.76 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:13 2011