| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,799,507 – 19,799,611 |
| Length | 104 |
| Max. P | 0.874292 |
| Location | 19,799,507 – 19,799,611 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 86.25 |
| Shannon entropy | 0.24579 |
| G+C content | 0.42275 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -20.31 |
| Energy contribution | -21.34 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19799507 104 - 23011544 GCUCGUCCGUAAUGAGCACGAACAAAAUUAAUGUGAUUUGUGUCGAAGGGUGCAACGACUGUAUUAUCGAAGUGGAAUAUACAGGAUAAUGCAGGAUAAUACUG ((((((.....))))))...............(((..(((..((....))..)))...((((((((((...(((.....)))..)))))))))).....))).. ( -26.60, z-score = -1.80, R) >droAna3.scaffold_12916 7171142 86 + 16180835 GCUCGUCCGUAAUGAGCACGAGCAAAUUUAAUGUGAUUUGUGUCGAAGGGUGCAACGGCUGUAUUAUCGAGCAGGACCA-AAGGCAU----------------- (((((...(((((((((.((.(((.......)))...(((..((....))..)))))))).))))))))))).......-.......----------------- ( -22.10, z-score = -0.15, R) >droEre2.scaffold_4845 18063604 92 + 22589142 GCUCGUCCGUAAUGAGCACGAACAAAAUUAAUGUGAUUUGUGUCGAAGGGUGCAACGACUGUAUUAUCGCACUGGA--AUACGGGAUAAUACAG---------- ((((((.....)))))).((.(((.......)))...(((..((....))..))))).((((((((((...(((..--...)))))))))))))---------- ( -26.00, z-score = -2.07, R) >droYak2.chr2R 6261389 92 - 21139217 GCUCGUCCGUAAUGAGCACGAACAAAAUUAAUGUGAUUUGUGUCGAAGGGUGCAACGACUGUAUUAUCGAACUGGA--AUACAGGAUAAUACAG---------- ((((((.....)))))).((.(((.......)))...(((..((....))..))))).((((((((((...(((..--...)))))))))))))---------- ( -26.70, z-score = -2.90, R) >droSec1.super_7 3404835 104 - 3727775 GCUCGUCCGUAAUGAGCACGAACAAAAUUAAUGUGAUUUGUGUCGAAGGGUGCAACGACUGUAUUAUCGAAGUGGAAUAUACAGGAUAAUGCAGGAUAAUACAG ((((((.....))))))..............((((..(((..((....))..)))...((((((((((...(((.....)))..)))))))))).....)))). ( -28.10, z-score = -2.42, R) >droSim1.chr2L 19458071 94 - 22036055 GCUCGUCCGUAAUGAGCACGAACAAAAUUAAUGUGAUUUGUGUCGAAGGGUGCAACGACUGUAUUAUCGAAGUGGAAUAUACAGGAUAAUACAG---------- ((((((.....)))))).((.(((.......)))...(((..((....))..))))).((((((((((...(((.....)))..))))))))))---------- ( -25.10, z-score = -2.19, R) >consensus GCUCGUCCGUAAUGAGCACGAACAAAAUUAAUGUGAUUUGUGUCGAAGGGUGCAACGACUGUAUUAUCGAACUGGAAUAUACAGGAUAAUACAG__________ ((((((.....)))))).((.(((.......)))...(((..((....))..))))).((((((((((................)))))))))).......... (-20.31 = -21.34 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:53:00 2011