| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,796,211 – 19,796,280 |
| Length | 69 |
| Max. P | 0.996123 |
| Location | 19,796,211 – 19,796,280 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Shannon entropy | 0.37865 |
| G+C content | 0.52943 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -14.92 |
| Energy contribution | -14.32 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.89 |
| SVM RNA-class probability | 0.996123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19796211 69 - 23011544 CAGCUGAUUGGGGGUAGAAGCACCGGAAGUGCCGGAAACGGGGAUGAAAAGUAUUCGAAAUUGGCGGGC ..((..(((..(((((...(((.(....))))((....))...........)))))..)))..)).... ( -19.00, z-score = -2.23, R) >droAna3.scaffold_12916 7167810 69 + 16180835 CAGCUGUUUUUUGGGGGAGAGCUGACAUCUAUCGGACUUGAGGGUGGAAAGUUUUUGAAUUUGGCGCGC ..((((..(((.....(((((((..(((((.(((....))))))))...))))))))))..)))).... ( -13.40, z-score = 0.70, R) >droEre2.scaffold_4845 18060254 65 + 22589142 CAGCUGAUUGGGGGUAAAA----CGGAAGUACCGGAAACGGGGAUGGAACGUAUUCAAAAUUGGCGGGC ..((..(((..(((((..(----(....)).(((....)))..........)))))..)))..)).... ( -21.00, z-score = -4.81, R) >droYak2.chr2R 6258423 65 - 21139217 CAGCUGAUUGGGGGUACAA----CGGACGUACCGGAAACGGGGAUGAAAAGUAUUCAAAAUUGGCGGGC ..((..(((..((((((.(----(....)).(((....))).........))))))..)))..)).... ( -21.40, z-score = -4.61, R) >droSec1.super_7 3401577 69 - 3727775 CAGCUGAUUGGGGGUAGAAGCACCGGAAGUGCCGGAAACGGGGAUGAACAGUAUUCAAAAUUGGCGGGC ..((..(((..(((((...(((.(....))))((....))...........)))))..)))..)).... ( -19.70, z-score = -2.33, R) >droSim1.chr2L 19455320 69 - 22036055 CAGCUGAUUGGGGGUAGAAGCACCGGAAGUGCCGGAAACGGGGAUGAAAAGUAUUCAAAAUUGGCGGGC ..((..(((..(((((...(((.(....))))((....))...........)))))..)))..)).... ( -19.70, z-score = -2.71, R) >consensus CAGCUGAUUGGGGGUAGAAGCACCGGAAGUACCGGAAACGGGGAUGAAAAGUAUUCAAAAUUGGCGGGC ..(((((((..(((((.......(....)..(((....)))..........)))))..))))))).... (-14.92 = -14.32 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:59 2011