| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,692,992 – 19,693,088 |
| Length | 96 |
| Max. P | 0.965083 |
| Location | 19,692,992 – 19,693,088 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 68.62 |
| Shannon entropy | 0.44572 |
| G+C content | 0.54600 |
| Mean single sequence MFE | -15.40 |
| Consensus MFE | -11.62 |
| Energy contribution | -11.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19692992 96 - 23011544 AAAAGCCGAACCCCCACCCCCCUCCUCAAACUCCUGCUCCGUCCUGCUCCUCUUCUAUAUCCACAAGCCAACACGGCCACUUU-GGUUCGUGUUGCG ...(((((((((.......................((........))...................(((.....)))......-)))))).)))... ( -15.10, z-score = -1.88, R) >droSec1.super_7 3307986 84 - 3727775 ------------AAAAGCCUCCUCCUCAAACUCCUGCUCCUUCCUGCUCCUCUUCUAUAUCCACAAGCCAACAUGGCCACUUU-GGUUCGUGUUGCG ------------.......................((........))...................((.(((((((((.....-)).))))))))). ( -12.30, z-score = -1.54, R) >droAna3.scaffold_12916 7076828 94 + 16180835 AACACCUUCUUCCCCGGUACACUACC---GGUCCUCCUCCGCCAGAUCGCUCCUUUAAAUCCACAAGCCAACAUGGCCACUUUCGGUUCGUGUUGCG .............((((((...))))---)).........((......))................((.(((((((((......)).))))))))). ( -18.80, z-score = -1.45, R) >consensus AA_A_C_____CCCCAGCCCCCUCCUCAAACUCCUGCUCCGUCCUGCUCCUCUUCUAUAUCCACAAGCCAACAUGGCCACUUU_GGUUCGUGUUGCG ..................................................................((.(((((((((......)).))))))))). (-11.62 = -11.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:46 2011