| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,690,501 – 19,690,597 |
| Length | 96 |
| Max. P | 0.510222 |
| Location | 19,690,501 – 19,690,597 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 62.77 |
| Shannon entropy | 0.58545 |
| G+C content | 0.48100 |
| Mean single sequence MFE | -24.51 |
| Consensus MFE | -7.91 |
| Energy contribution | -8.15 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19690501 96 - 23011544 CCGCACACACGCAGCAUGCACACAAGUAUUUGUGUGUGAGGUCAGCAUUUA---CCCCAACUCC-------GGGUGACA-UUUCCUUUGUUG-CAACGCUUGCCAGCU ..((.(((((((((.((((......))))))))))))).(((.(((.....---..((......-------))(..(((-.......)))..-)...))).))).)). ( -32.20, z-score = -2.17, R) >droWil1.scaffold_180708 8439950 77 + 12563649 ----ACACACGGGGUCAGCAUAUAUAUACAUAUAU---UGCACAGCACCCA---CGCUCACUU----------GUGACA-UUUCUUUUGUUGACAGCU---------- ----......(((((..((((((((....))))).---)))...)).))).---.......((----------((((((-.......)))).))))..---------- ( -12.90, z-score = -0.17, R) >droPer1.super_5 6187633 92 - 6813705 --GCAUACA---AACGCUUAUGCAUAUCCAUGUGUGUGAGGUCAGCAUUUAACCCCCCCGCUUCUCCAUCGCUGUGACAUUUUCUUUUGUUG-CAGCU---------- --(((((((---...((....)).......)))))))((((..(((.............)))...)).))((((..(((........)))..-)))).---------- ( -22.52, z-score = -2.14, R) >dp4.chr4_group5 1778117 92 - 2436548 --GCAUACA---AACGCUUAUGCAUAUCCAUGUGUGUGAGGUCAGCAUUUAACCCCCCCGCUUCUCCAUCGCUGUGACAUUUUCUUUUGUUG-CAGCU---------- --(((((((---...((....)).......)))))))((((..(((.............)))...)).))((((..(((........)))..-)))).---------- ( -22.52, z-score = -2.14, R) >droYak2.chr2R 6163503 96 - 21139217 CCGCACACACGCAGCAUGCACACAAGUAUUUGUGUGUGAGGUCAGCAUUUA---CCCCAACUCC-------GGGUGACA-UUUCCUUUGUUG-CAACGCUAGCCAGCU ..((.(((((((((.((((......))))))))))))).((..(((.....---..((......-------))(..(((-.......)))..-)...)))..)).)). ( -32.40, z-score = -2.45, R) >consensus __GCACACACG_AGCACGCAUACAUAUACAUGUGUGUGAGGUCAGCAUUUA___CCCCCACUUC_______CGGUGACA_UUUCUUUUGUUG_CAGCU__________ ................((((((((((....))))))))))..(((((...........(((............)))...........)))))................ ( -7.91 = -8.15 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:45 2011