| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,688,450 – 19,688,544 |
| Length | 94 |
| Max. P | 0.513095 |
| Location | 19,688,450 – 19,688,544 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.17 |
| Shannon entropy | 0.34438 |
| G+C content | 0.48004 |
| Mean single sequence MFE | -27.13 |
| Consensus MFE | -19.81 |
| Energy contribution | -20.82 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19688450 94 + 23011544 CAACGGGCUGUGCAAGUUUGGUCACACAAUGAAAGGAUGCGAAAGUGCUUUGCUACGGAUGGAAAGUCCCAUAAAUUGGCACUAUGGCCUGUCG ..((((((((((((..(((..(((.....)))..))))))...((((((.......((((.....))))........))))))))))))))).. ( -26.26, z-score = -0.57, R) >droSec1.super_7 3303485 94 + 3727775 CAACGGGCUGUGCAAGUUUGGUCACAUAAUGAAAGGAUGCGAAAGUGCCUUGCUGCGGAUGGAAAGUCCCAUAAAUUGGCACUAUGGCCUGUCG ..(((((((((((.((((((............((((.(((....)))))))..((.((((.....)))))))))))).))))...))))))).. ( -29.50, z-score = -1.18, R) >droSim1.chr2L 19356560 94 + 22036055 CAACGGGCUGUGCAAGUUUGGUCACAUAAUGAAAGGAUGCGAAAGUGCCUUGCUGCGGAUGGAAAGUCCCAUAAAUUGGCACUAUGGCCUGUCG ..(((((((((((.((((((............((((.(((....)))))))..((.((((.....)))))))))))).))))...))))))).. ( -29.50, z-score = -1.18, R) >droEre2.scaffold_4845 17965191 94 - 22589142 CAACGGGCUCUGCAAGUUUAGUCACAUCAUGAAAGGAUGCGAAAGUGCCUAGCUGCGGAUAGAAACUCCCAUAAAUUGGCAUUAUGGCCUGUCG ..((((((((((((.(((...(((.....))).(((.(((....))))))))))))))).........(((.....))).......)))))).. ( -24.60, z-score = -0.41, R) >droAna3.scaffold_12916 7072837 81 - 16180835 ---CAGGCUGUGCCAUUUUUGUCACAUAAUGAAAGGAUUUUAGAGUGG--------GCAUUCGGAGCAACGAAAGU--GCAUUAUAGCCUGUCA ---((((((((((((((((.(((............)))...)))))))--------(((((((......)))..))--))..)))))))))... ( -25.80, z-score = -2.68, R) >consensus CAACGGGCUGUGCAAGUUUGGUCACAUAAUGAAAGGAUGCGAAAGUGCCUUGCUGCGGAUGGAAAGUCCCAUAAAUUGGCACUAUGGCCUGUCG ..((((((((((((..(((..(((.....)))..))))))...((((((.......((((.....))))........))))))))))))))).. (-19.81 = -20.82 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:45 2011