Locus 2515

Sequence ID dm3.chr2L
Location 19,682,048 – 19,682,153
Length 105
Max. P 0.639629
window3461

overview

Window 1

Location 19,682,048 – 19,682,153
Length 105
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 92.35
Shannon entropy 0.11821
G+C content 0.48137
Mean single sequence MFE -35.08
Consensus MFE -29.33
Energy contribution -31.07
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.31
SVM RNA-class probability 0.639629
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 19682048 105 + 23011544
--------GUGUGUGUGUGUUCGUUUGUUGUGCCACACGGACAUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUG
--------((.((((((.((.((.....)).)))))))).))(((((((((((((((......))).))))))))))))......((((.(..((((....))))..).)))) ( -36.10, z-score =  -2.46, R)
>droSim1.chr2L 19350021 113 + 22036055
GUGUGUGUGAGUGUGAGUGUUCGUUUGUUGUGCCACACGGACAUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUG
........((.(((((((((((((.((......)).))))))))(((((((((((((......))).)))))))))).....))))).))....(((....)))......... ( -36.60, z-score =  -1.55, R)
>droYak2.chr2R 6155789 105 + 21139217
--------GUGUGUGUGUGGUCGUUUGUUGUGCCACACGGACAUGCACAUUCGACGUUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUG
--------((((.((((((((((.....)).)))))))).))))((((((((((((........)).))))))))))........((((.(..((((....))))..).)))) ( -35.60, z-score =  -2.30, R)
>droEre2.scaffold_4845 17958633 105 - 22589142
--------GUGUGUGUGCAGUCGUUUGUUGGGCCACACGGACAUGCACAUUCGACGUUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUCCAGCCGUUAAACUG
--------((.((((((..(((........))))))))).))((((((((((((((........)).))))))))))))......((((.(..((((....))))..).)))) ( -32.00, z-score =  -0.75, R)
>consensus
________GUGUGUGUGUGGUCGUUUGUUGUGCCACACGGACAUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUG
..........((.((((((((((.....)).)))))))).))(((((((((((((((......))).))))))))))))......((((.(..((((....))))..).)))) (-29.33 = -31.07 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:42 2011