| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,650,110 – 19,650,203 |
| Length | 93 |
| Max. P | 0.956440 |
| Location | 19,650,110 – 19,650,203 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.77 |
| Shannon entropy | 0.53162 |
| G+C content | 0.50580 |
| Mean single sequence MFE | -29.46 |
| Consensus MFE | -16.71 |
| Energy contribution | -17.75 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19650110 93 - 23011544 AUUGCAAAGGCAACA---AACCAAGC--------AGUUGCCAAGUU--GCAACUCAA---GACGGCGACUUUUGGUAUUUACGUGUGCAGCUCGGUUGCACGCAACGCG ...((...(....).---.((((((.--------(((((((...((--(.....)))---...)))))))))))))......(((((((((...)))))))))...)). ( -32.40, z-score = -1.71, R) >droSim1.chr2L 19338418 83 - 22036055 -----------AUUG--CAACCUAGC--------AGUUGCCAAGUU--GCAACUCAA---GACGGCGACUUUUGGUACUUACGUGUGCAGCUCGGUUGCACGCAACGCG -----------..((--(((((.(((--------(((((((...((--(.....)))---...)))))))....((((......)))).))).)))))))(((...))) ( -29.30, z-score = -1.42, R) >droSec1.super_7 3286486 104 - 3727775 AUUGCAAAGGCAACAAGCAACCAAGCAGUUGCCAAGUUGCCAAGUU--GCAACUCAA---GACGGCGACUUUUGGUAUUUACGUGUGCAGCUCGGUUGCACGCAACGCG .((((....))))...((.((((((.(((((((.((((((......--))))))...---...)))))))))))))......(((((((((...)))))))))...)). ( -39.80, z-score = -2.45, R) >droEre2.scaffold_4845 17948020 90 + 22589142 -----------ACUCCGAAGGCAACUCGC-----UUUUCCCAAGUUUCCCAACUCAA---GACGACGACUUUUGCUAUUUACGUGUGCAGCUCGGUUGCACGCAACUCA -----------.....((.(((((.(((.-----((.((...((((....))))...---)).)))))...)))))......(((((((((...)))))))))...)). ( -20.40, z-score = -0.77, R) >droAna3.scaffold_12916 7056363 93 + 16180835 ----------UAUUUGAACGGCAGCCA------CCGCCACCAAGUUACUCAAUUUAAGUCGUCGACGACGUUUGAUAUUUACGUGUGCGGUUUCCUCGCACGCAACUCU ----------...(..((((((.....------..)))...................((((....)))))))..).......((((((((.....))))))))...... ( -25.40, z-score = -1.85, R) >consensus ___________AAUA__AAACCAAGC________AGUUGCCAAGUU__GCAACUCAA___GACGGCGACUUUUGGUAUUUACGUGUGCAGCUCGGUUGCACGCAACGCG ...................((((((.........(((((((......................)))))))))))))......(((((((((...)))))))))...... (-16.71 = -17.75 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:40 2011