| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,648,265 – 19,648,330 |
| Length | 65 |
| Max. P | 0.935239 |
| Location | 19,648,265 – 19,648,330 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 93.85 |
| Shannon entropy | 0.08477 |
| G+C content | 0.28718 |
| Mean single sequence MFE | -12.40 |
| Consensus MFE | -12.23 |
| Energy contribution | -12.23 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19648265 65 + 23011544 UUAUCUAUUGCAAUUAAGUAGAUGAUGUUUUCAAUUCCUGAGUUUGAGGAUUAACAAAAUAGAGU (((((((((.......)))))))))((((((....((((.......)))).....)))))).... ( -11.50, z-score = -1.21, R) >droSec1.super_7 3284636 65 + 3727775 UUAUCUAUUGCAAUUAAGUAGAUGAUGUUUUCAAGUUCUUAGUUCGAGGAUUAACGAAAUAGAGU (((((((((.......)))))))))((((((..(((((((.....)))))))...)))))).... ( -12.10, z-score = -1.32, R) >droSim1.chr2L 19336556 65 + 22036055 UUAUCUAUUGCAAUUAAGUAGAUGAUGUUUUCAAGUUCUUAGUUCGAGGAUUAACAAAACAGAGU (((((((((.......)))))))))((((((..(((((((.....)))))))...)))))).... ( -13.60, z-score = -2.20, R) >consensus UUAUCUAUUGCAAUUAAGUAGAUGAUGUUUUCAAGUUCUUAGUUCGAGGAUUAACAAAAUAGAGU (((((((((.......)))))))))((((((..(((((((.....)))))))...)))))).... (-12.23 = -12.23 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:40 2011