| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,646,297 – 19,646,373 |
| Length | 76 |
| Max. P | 0.755157 |
| Location | 19,646,297 – 19,646,373 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 90.31 |
| Shannon entropy | 0.16844 |
| G+C content | 0.47437 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -13.54 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19646297 76 + 23011544 CCACAGAUAUGGGGGCCAAAACCGAAACAGGCCCACCGGAGUGUAUCAACAAAAAUAUGCUCCCUCAUCCAGUAGU .....(((..(((((((............))))).))(((((((((........)))))))))...)))....... ( -22.50, z-score = -2.31, R) >droEre2.scaffold_4845 17944320 72 - 22589142 CCGCAGACAUAG-GGCCAAAACCAAAAGAGGCCCACCGGAGUGUAUCAACAAAA-UAUGUUCCC--AUCCACUAGU ...........(-((((............)))))...((((..(((.......)-))..)))).--.......... ( -16.20, z-score = -1.93, R) >droYak2.chr2R 6141529 73 + 21139217 CCUCAGACAUAG-GGCCAAAACCAAAACAGGCCCACCAGAGUGUAUCAACAAAAAUAUGCUCCC--AUCCAGUAGU ......((...(-((((............)))))....((((((((........))))))))..--.....))... ( -16.20, z-score = -2.91, R) >droSec1.super_7 3282758 74 + 3727775 CCACAGACAUGGUGGCCAAAACCAAAACAGGCCCAACGGAGUGUAUAAACAAAAAUAUGCUCCC--AUCCAGUAGU ......((.(((.((((............))))....(((((((((........))))))))).--..)))))... ( -18.00, z-score = -1.97, R) >droSim1.chr2L 19334678 76 + 22036055 CCACAGACAUGGUGGCCAAAACCAAAACAGGCCCAACGGAGUGUAUAAACAAAAAUAUGCUCCCUCAUCCAGUAGU ......((.(((.((((............))))....(((((((((........))))))))).....)))))... ( -18.00, z-score = -1.93, R) >consensus CCACAGACAUGG_GGCCAAAACCAAAACAGGCCCACCGGAGUGUAUCAACAAAAAUAUGCUCCC__AUCCAGUAGU ...........(.((((............)))))...((((..(((........)))..))))............. (-13.54 = -13.78 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:39 2011